Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1211
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    28   0.90 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   2.1  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   4.8  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   4.8  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   8.4  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   8.4  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 375 KGYK-GTSIRVQIQRPLW--QLKVFPDVLLVEQLEIILSCGPSYAG 247
           K YK   S++V    PL     + FP  L+  Q+ II S GPSY+G
Sbjct: 561 KSYKTNDSLKVPPLVPLLIGTTRFFPVPLVSSQIAIISSLGPSYSG 606


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +1

Query: 289 LDE--EYIRKNFKLPQRALYLDPYRRPLITFP--MTQEDCKHFNLARKYKINQQILDGYL 456
           LDE   Y+ KNF+  +RAL  +P     +T+P  +     K +      K  +Q+L  YL
Sbjct: 652 LDEAKRYMSKNFQPDKRALLFNPRTANDMTYPPSLFSSLIKEYTSLGDIKEAKQVLSTYL 711

Query: 457 D 459
           +
Sbjct: 712 E 712


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
 Frame = +1

Query: 394 CKHFNLARKY-----KINQQILDGYLDPGESISAPSVFPYMKTRQKSKAKLMMMKEIISY 558
           CKH+  A  Y      +N+     YLD    + A  +F   KT      K ++   +  Y
Sbjct: 415 CKHYVYASLYACLFCNLNEGSPKDYLDNDIYVHARCLFLLTKTLNLDSLKSILCSRVRLY 474

Query: 559 YSFLIMY--TNVL 591
           Y+  I Y  T+VL
Sbjct: 475 YNIEIAYYFTDVL 487


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 419  FLAKLKCLQSSCVIGKVIRGRLYGSKYNALCGNLKFFLMYSSSSNWKSF 273
            F+  + CL S     + +R  L+GS +   CG L      +  + WK +
Sbjct: 1663 FVDTMPCLLSKLEFDEELRIELFGSFWKEYCGELNI----NDPNTWKEY 1707


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 358 VYTGPNTTPSVAT*SFS*CTPRRATGNHFEL 266
           V  GP++TP+++  S S   P+   G HF L
Sbjct: 452 VVVGPDSTPTLSFTSGSEGIPKGVKGRHFSL 482


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 340 YLDPYRRPLITFPMTQEDCKHFNLARKYKINQQI---LDGYLDPGESI 474
           Y  P   P +   +   D +H  L R  +  + +   L G+L+PGES+
Sbjct: 220 YQYPRTDPCVIMVILSHDMQHILLGRALRHPKGLYACLAGFLEPGESL 267


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 457 DPGESISAPSVFPYMKTRQKSKAKLMMMKEIISYYSFLIMYTNVL 591
           +PG      S + Y+    K++     +  II YY+FL+ + N++
Sbjct: 764 EPGTDYVDGSTYLYISFNYKTRQLWRNLAIIIGYYAFLV-FVNIV 807


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,145
Number of Sequences: 5004
Number of extensions: 52970
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)