Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1211
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447 30 1.6
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485... 29 2.1
08_01_0764 - 7332969-7333870,7334044-7334369,7334712-7335384,733... 29 2.8
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 29 2.8
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 28 4.9
11_04_0421 - 17477935-17478234,17478470-17478679 28 4.9
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 28 4.9
09_02_0452 - 9498193-9498468 28 4.9
06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150... 28 4.9
04_01_0222 - 2805329-2805780,2805866-2806611,2806730-2806778,280... 28 4.9
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 28 6.5
01_01_0376 + 2926426-2927040,2927150-2927239,2927674-2927892 28 6.5
09_02_0363 - 7871730-7871853,7871986-7872075,7872720-7872799,787... 27 8.6
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 27 8.6
>05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447
Length = 607
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 125 FCKMTSCCTCEGHHSGAKSSLPLVCLVPRD 214
FCK SCC C SL LVC D
Sbjct: 68 FCKRCSCCICHQFDDNKDPSLWLVCASEND 97
>03_03_0206 +
15447054-15447181,15448243-15448298,15448373-15448515,
15448630-15448827,15448901-15449100,15449585-15449684,
15449769-15450350,15450434-15450556,15451028-15451108,
15451188-15451495,15451577-15451816,15452261-15452345,
15452429-15452606,15453053-15453227,15453826-15453982
Length = 917
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 432 PTNIGRLLGSRRINICAERFPIYE 503
PT++GRL R+N+C+E IY+
Sbjct: 32 PTDVGRLACVSRLNLCSENDEIYQ 55
>08_01_0764 -
7332969-7333870,7334044-7334369,7334712-7335384,
7336195-7336219
Length = 641
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 125 FCKMTSCCTCEGHHSGAKSSLPLVC 199
+CK SCC C + SL LVC
Sbjct: 155 YCKRCSCCICHKYDENKDPSLWLVC 179
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 29.1 bits (62), Expect = 2.8
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Frame = +1
Query: 184 SAAGLPGSSRWSIFGSQDKAPA-----CIA-GPTTQNDFQLLDEEYIRKNFKLPQRALYL 345
S++ P + + FGS D+ A CI GP T DF+ LD + I+ N + + ++L
Sbjct: 62 SSSSPPPTPAAASFGSGDEQAAGSPGFCIIEGPETVQDFEKLDLQEIQDNIRSRRNKIFL 121
Query: 346 DPYRRPLITFPMTQEDCKHFNLARKYKINQQILDGYLDPGESISAP 483
+ + C R+ +I Q+I + ++ G S+ P
Sbjct: 122 HMEELAPLLVNLYSRYC-DIKQIRRLRIQQRIKN--VELGISVDVP 164
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 125 FCKMTSCCTCEGHHSGAKSSLPLVC 199
FCK SCC C SL LVC
Sbjct: 347 FCKRCSCCICHLFDDNKDPSLWLVC 371
>11_04_0421 - 17477935-17478234,17478470-17478679
Length = 169
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Frame = +1
Query: 241 APACIAGPTT-----QNDFQLLDE-EYIRKNFKLPQRALYLDPYRRP 363
AP C PT Q ++D Y F P+RA ++DP R P
Sbjct: 6 APQCYKAPTRSRLPEQKKLSIIDSFRYFLVRFPSPKRAQHMDPAREP 52
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 297 LVEQLEIILSCGPSYAGRGFVLASEDAPSRGTRQTSGRLDLA 172
L+ Q + I + G S AG+G LA E SRG+ R D A
Sbjct: 272 LLAQQQNIATPGVSSAGKGKRLADEAGTSRGSASKKSRSDSA 313
>09_02_0452 - 9498193-9498468
Length = 91
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 459 SRRINICAERFPIYENEAEKQSEADDDE 542
SRR CA ++ +AE++ E DDD+
Sbjct: 52 SRRCGSCAHTNSLHGRDAEREDEGDDDK 79
>06_01_0194 +
1503350-1503554,1504399-1504490,1504835-1504935,
1506186-1506276,1506616-1506674,1506764-1506884,
1506959-1507027,1507321-1507373,1507688-1507796,
1507895-1508065,1508148-1508306,1508561-1508650,
1508751-1508933,1509837-1510027,1510340-1510787
Length = 713
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 424 KINQQILDGYLDPGESISAPSVFPYMKTRQKSKAKLMMMKEIISYYSFLIMYTN 585
K+N+QI+D L E + A +K K KL M K +++ F M+ N
Sbjct: 447 KVNRQIMDNILKEEEEMDADLENDEKSGIKKKKKKLEMNKALLTDPRFKEMFEN 500
>04_01_0222 -
2805329-2805780,2805866-2806611,2806730-2806778,
2807031-2807748,2808513-2808824
Length = 758
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 297 LVEQLEIILSCGPSYAGRGFVLASEDAPSRGTRQTSGRLDLA 172
L+ Q + I + G S AG+G LA E SRG+ R D A
Sbjct: 161 LLAQQQNIATPGVSSAGKGKRLADEAGTSRGSASKKSRSDSA 202
>06_03_0151 + 17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 184 SAAGLPGSSRWSIFGSQDKAPACIAGPTTQNDFQLLD 294
+ AGL SS ++FG K AC + P + D +LD
Sbjct: 1327 AGAGLYDSSLKNLFGITTKLTACFSVPMDEEDEVILD 1363
>01_01_0376 + 2926426-2927040,2927150-2927239,2927674-2927892
Length = 307
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 428 ILYFLAKLKCLQSSCVIGKVIRGRLYGSKYNAL 330
++ FLA L CL S +I + + R+ GS N L
Sbjct: 28 VVEFLASLLCLPMSTIINLLTKERMVGSMGNVL 60
>09_02_0363 -
7871730-7871853,7871986-7872075,7872720-7872799,
7872881-7872964,7874944-7874992,7875114-7875240,
7875798-7875934,7876004-7876050,7876126-7876185,
7876810-7876862,7878205-7878269,7879050-7879174,
7879307-7879366,7879670-7879806,7880737-7880805,
7880889-7881045,7881121-7881235,7881855-7881916
Length = 546
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 281 SSCSTRSTSGKTLSCHRGRCIWTRIDVPL 367
++CS G TL G+C W +I + L
Sbjct: 121 NNCSGNHVEGSTLQKLEGKCFWGKIPIDL 149
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 84 LFCLCFYHFFVCFNLFKFCTKN 19
LF LCF+ F + FN TKN
Sbjct: 97 LFVLCFFLFQIAFNCLLITTKN 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,018,565
Number of Sequences: 37544
Number of extensions: 347166
Number of successful extensions: 959
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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