Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1211
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68333-2|CAA92722.1|  149|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic nucleoti...    30   1.4  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   1.4  
U53333-3|AAA96156.1|  108|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U00035-4|AAA50646.2|  482|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    27   7.7  
AC006714-14|AAK29720.2|  264|Caenorhabditis elegans F-box a prot...    27   7.7  

>Z68333-2|CAA92722.1|  149|Caenorhabditis elegans Hypothetical
           protein C05C12.5 protein.
          Length = 149

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 170 GAK--SSLPLVCLVPRDGASSEARTKPRPA*LGPQLKMISSCSTRSTS 307
           GAK   SLP   +VP   + SE    P P  + PQL   S  S  S+S
Sbjct: 38  GAKPSDSLPDRTIVPSPSSQSERSCSPEPRIVAPQLSAYSGSSAASSS 85


>Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +1

Query: 262 PTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRRPLITFPMTQEDCKHFNLARKYKINQQI 441
           P +++ F LLD     K      R L   P R P +   + + +     L  +   ++  
Sbjct: 43  PRSEDSFDLLDPANASKEPSASTRPLPYPPTRPPEVVIQIDEVESPILGLIDETDDHE-- 100

Query: 442 LDGYLDPGESISAPSV 489
           LDG LDP  S  A S+
Sbjct: 101 LDGRLDPASSFDANSL 116


>Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +1

Query: 262 PTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRRPLITFPMTQEDCKHFNLARKYKINQQI 441
           P +++ F LLD     K      R L   P R P +   + + +     L  +   ++  
Sbjct: 43  PRSEDSFDLLDPANASKEPSASTRPLPYPPTRPPEVVIQIDEVESPILGLIDETDDHE-- 100

Query: 442 LDGYLDPGESISAPSV 489
           LDG LDP  S  A S+
Sbjct: 101 LDGRLDPASSFDANSL 116


>U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 800

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +1

Query: 262 PTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRRPLITFPMTQEDCKHFNLARKYKINQQI 441
           P +++ F LLD     K      R L   P R P +   + + +     L  +   ++  
Sbjct: 43  PRSEDSFDLLDPANASKEPSASTRPLPYPPTRPPEVVIQIDEVESPILGLIDETDDHE-- 100

Query: 442 LDGYLDPGESISAPSV 489
           LDG LDP  S  A S+
Sbjct: 101 LDGRLDPASSFDANSL 116


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +3

Query: 369 NLSDDTRRL*AFQLSQKV*D*PTNIGRLLGSRRINICAERFPIYENEAEKQSEADDDERN 548
           NL     ++ A  LSQKV +      R+ GS   N+  + F   ++E EK+ E   +++ 
Sbjct: 246 NLLQRALQIFAGSLSQKVEEVLAENNRINGSSIQNVLTKDFEYSDDEEEKEKEPQPEKQK 305

Query: 549 NI 554
           N+
Sbjct: 306 NL 307


>U53333-3|AAA96156.1|  108|Caenorhabditis elegans Hypothetical
           protein F36A4.11 protein.
          Length = 108

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 374 KVIRGRLYGSKYNALCGNLKFFLMYSSSSNWKSF*VVGPAMQAGALSWLPKMLHRE 207
           K++ GR  G  Y        +FL   ++S WK     GPA   GA SW   ++H +
Sbjct: 17  KIVTGRSTGFGYVRGSWFFFYFLKNFTNSVWKLGSPTGPAGTPGATSW-QNLVHND 71


>U00035-4|AAA50646.2|  482|Caenorhabditis elegans Hypothetical
           protein R01H2.4 protein.
          Length = 482

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 360 TSIRVQIQRPLWQLKVFPDVLLVEQLEIILSCGPSYAGRGF-VLASEDAPSRGT 202
           TS ++ I  P W+ K FP   + + L   ++    +   GF  LA EDA    T
Sbjct: 311 TSPKMSIYLPHWKTKDFPSSRISQHLVATMNLNSLFVAGGFGDLAVEDAVPSAT 364


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 122  QFCKMTSCCTCEGHHSGAKSSLPLVCLVPRDGASSEARTK 241
            ++C   S C C G ++G ++    VCL PR    +  + K
Sbjct: 1313 RYC-FPSGCQCSGAYTGTQACANSVCLFPRTSCCAPYKKK 1351


>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +2

Query: 134 MTSCCTCEGHHSGAKSSLPLVCLVPRDGASSEARTKPRPA*LGPQLKMISSCSTRSTSGK 313
           M+ C +  G H   K S   V      G     RT    + +GP L  + +  T STSG 
Sbjct: 83  MSLCVSDNGDHESDKLS---VVSETDSGVVGCGRTSRPSSIIGPPLSRLHNILTPSTSGV 139

Query: 314 TLSCH 328
            L C+
Sbjct: 140 QLVCN 144


>AC006714-14|AAK29720.2|  264|Caenorhabditis elegans F-box a protein
           protein 77 protein.
          Length = 264

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 257 LGPQLKMISSCSTRSTSGKTLSCH 328
           L   LK + +C+TRS   K LSCH
Sbjct: 102 LASTLKNLENCTTRSLLLKDLSCH 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,044,894
Number of Sequences: 27780
Number of extensions: 310415
Number of successful extensions: 932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)