Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1210
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 28 0.61
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 27 1.1
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 26 1.9
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 26 2.5
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 5.7
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 5.7
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 24 7.6
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 24 7.6
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 24 7.6
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 24 10.0
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 24 10.0
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 27.9 bits (59), Expect = 0.61
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 284 SLHTAEGVSPVPSNKSCKLHLXQVKLHKRDNKHTFQRVWR 165
+L TAEGV P+ + L +L+ +N H + R+W+
Sbjct: 61 NLETAEGVYRDPTINEGEEELVTWELNDPENPHNWSRLWK 100
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 1.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 96 VQTTXKKIHAYSHHLFALRTL 158
++ KKIH ++H +F LRTL
Sbjct: 63 LKVAVKKIHPFNHPVFCLRTL 83
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 1.9
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +2
Query: 11 FKNFKMKTLIFIMLVACVASAAYGALVCGTDYXEKNPCIQPPLVCPKNTEHRARHAGKCA 190
F+ FK ++ +AS G + D+ + + PPL PK+ HR AG+
Sbjct: 301 FEKFKKSNKKTVLFTTDIASR--GLDIPNVDFVLQ---LDPPLD-PKSFSHRCGRAGRAG 354
Query: 191 CCPACVTLLGEG 226
+ LL +G
Sbjct: 355 RAGVAIVLLNDG 366
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 25.8 bits (54), Expect = 2.5
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Frame = +3
Query: 75 RTVLWYVVQTTX-----KKIHAYSHHLFAL 149
R + WY + TT + I+AY HHLF +
Sbjct: 109 RFINWYFLMTTLYYAYGESIYAYFHHLFIM 138
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 5.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 281 LHTAEGVSPVPSNKSCKLHLXQVKLHKRDNK-HTFQRVWRDA 159
L + +S V SN SC +K+H+ +++ H R W DA
Sbjct: 28 LRVWKDISKVDSNDSCSSESGDLKIHEVNSEGHIIVR-WDDA 68
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 168 ARCSVFLGQTSGGCMHGFFSQ*SVPHTKAPY 76
ARC F+ Q SGG + GF + + + K Y
Sbjct: 161 ARCFDFVLQKSGGNILGFLGKARILYAKGNY 191
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 952
Score = 24.2 bits (50), Expect = 7.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -2
Query: 245 NKSCKLHLXQVKLHKRDNKHTFQRVWRD 162
N KLH ++ R+ +HT Q+ + D
Sbjct: 924 NSELKLHCFELSERLREREHTLQQTFGD 951
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 24.2 bits (50), Expect = 7.6
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 2 RNXFKNFKMKTLIFIMLVACVASAAYGALVCGTDYXEKNP-CIQPPLVCPK 151
RN F N+++++ I + V+ AL CG +P +QP + P+
Sbjct: 11 RNRFSNYRLRSQIIKYKYSNVSYLNKSALRCGQATDSTHPHILQPGELTPR 61
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 24.2 bits (50), Expect = 7.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 110 EKNPCIQPPLVCPKNTEHR 166
E P +QPP CP + ++
Sbjct: 114 EATPAVQPPATCPMSNSNQ 132
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 342 RKIXACNTSITTCSKYNL 395
+ + +CN SI+ CS NL
Sbjct: 149 KSLRSCNISISNCSSVNL 166
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 23.8 bits (49), Expect = 10.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 389 IFRTGRDRSIASXYFPXNEIDYTXLVLTLLMHLRGSLHTAEGV 261
I+ T RD ++ S F I+Y LV L+G L A+G+
Sbjct: 573 IYLTDRDMNVVSYSFNLAIIEYQSLV------LKGDLEAAQGL 609
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,280
Number of Sequences: 5004
Number of extensions: 27921
Number of successful extensions: 78
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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