Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1210
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0522 - 3834551-3835451,3835992-3836572                           29   1.4  
08_01_0267 - 2153421-2153759,2153895-2154098,2154358-2154429,215...    28   3.1  
02_02_0200 - 7718760-7718816,7718910-7719011,7719643-7719726,771...    28   3.1  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    28   3.1  
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281...    27   7.2  
12_01_0095 + 745244-745590,745697-745706                               26   9.5  
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540...    26   9.5  
06_03_0397 + 20370146-20370256,20371223-20371312,20371411-203714...    26   9.5  
05_04_0119 - 18169729-18169887,18170515-18170653,18170728-181709...    26   9.5  
01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583...    26   9.5  

>01_01_0522 - 3834551-3835451,3835992-3836572
          Length = 493

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 119 PCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEG-ATCKIYSXEQAKPPPLCVRSLSN 295
           P IQP L C     H+  HA +CA   A     G+G    +    E A+P  + V  ++ 
Sbjct: 271 PTIQPVLSCIFRGVHKCHHAKECAGGGAAAGNNGDGDGNDEEAETETAEPEVVVVEPVAA 330

Query: 296 ASK 304
            SK
Sbjct: 331 RSK 333


>08_01_0267 -
           2153421-2153759,2153895-2154098,2154358-2154429,
           2154514-2154599,2154704-2154830,2154899-2155052,
           2156129-2156451
          Length = 434

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 209 TLLGEGATCKIYSXEQAKPPPLCVRSLSNASKE 307
           TLLG+GA   +Y  + +    L V+ L+N SK+
Sbjct: 119 TLLGQGAFGPVYKADLSSGETLAVKVLANNSKQ 151


>02_02_0200 -
           7718760-7718816,7718910-7719011,7719643-7719726,
           7719821-7719916,7720016-7720066,7720162-7720302,
           7720717-7720773,7720864-7720938,7721033-7721305,
           7721382-7721441,7721531-7721620,7722519-7722638
          Length = 401

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 122 MDFFXSSLYHIPKHRTLLTQRMP 54
           M+F   SLY + KH + + QRMP
Sbjct: 149 MEFVPESLYRVLKHYSNMNQRMP 171


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 137 LVCPKNTEHRARHAGKCACCP 199
           L C K++  R  HAGKC  CP
Sbjct: 313 LQCGKHSCERGCHAGKCGGCP 333


>11_01_0370 +
           2814888-2814979,2815450-2815620,2815753-2815834,
           2816275-2816316,2816397-2816456,2816817-2816913,
           2817382-2819024,2819155-2819256,2819369-2819509,
           2819625-2819750,2819935-2820096
          Length = 905

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 209 LHKRDNKHTFQRVWRDAQCS*GKQVVAVCMDFFXSSLYHIPKHRTLL 69
           ++ + +    Q+V+RD Q     Q +A+  D   SSL  + K   L+
Sbjct: 259 VYSKPDVRFIQQVYRDGQLGSNAQSIAMSSDLISSSLRSVQKQPLLM 305


>12_01_0095 + 745244-745590,745697-745706
          Length = 118

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 17  NFKMKTLIFIMLVACVASAAYGALVCGTDYXEKNPCI 127
           NFK    + +M +   A  A  A+ CG       PCI
Sbjct: 5   NFKAVAAVMVMAMVVAAPGASAAITCGQVGSAIAPCI 41


>08_02_1556 -
           27852247-27852738,27853005-27853197,27854006-27854070,
           27854161-27854199,27854572-27854592,27854819-27855052,
           27855420-27855504,27855953-27856026,27856516-27856647,
           27856735-27856834,27857296-27857361,27857472-27857509,
           27858013-27858219,27858378-27858427,27858871-27858940,
           27859065-27859133,27859456-27859530,27860456-27860530,
           27860887-27860934
          Length = 710

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +2

Query: 20  FKMKTLIFIMLVACVASAAYGALVCGTDYXEKNPCIQP 133
           F+  +   +  + CV S  +G  +C + +  +NP   P
Sbjct: 457 FEFSSKFLVDFMDCVLSCRFGNFLCNSFHKHRNPFYDP 494


>06_03_0397 +
           20370146-20370256,20371223-20371312,20371411-20371470,
           20371553-20371825,20371917-20371991,20372074-20372130,
           20372820-20372960,20373066-20373116,20373194-20373289,
           20373482-20373565,20375739-20375840,20376260-20376331
          Length = 403

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 122 MDFFXSSLYHIPKHRTLLTQRMP 54
           M+F   SLY + KH   + QRMP
Sbjct: 146 MEFVPESLYRVLKHYKDMKQRMP 168


>05_04_0119 -
           18169729-18169887,18170515-18170653,18170728-18170974,
           18171585-18171968,18172251-18172540,18172884-18173295,
           18173409-18173420,18173943-18174135
          Length = 611

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +2

Query: 77  YGALVCGTDYXEKNPCIQPPLVCPKNTEHRARHAGKCACCP 199
           YG  VC   Y E  PC     +       R+RH    + CP
Sbjct: 91  YGVDVCPLKYNEYIPCHDASYISQLKKLDRSRHEDLESICP 131


>01_05_0772 +
           25056973-25057285,25057678-25058006,25058113-25058360,
           25058481-25059396
          Length = 601

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
 Frame = -1

Query: 216 SKVTQAGQQAHFP------ACLARCSVFLGQTSGGC--MHGFFSQ*SVPHTKAPYAADAT 61
           SK T+  QQA FP       C+ +    L      C  +  F  Q S  +T APYA+   
Sbjct: 529 SKATKTNQQAFFPFGWGPRICIGQNFAMLEAKMALCVILQNFEFQLSPSYTHAPYASVTL 588

Query: 60  H 58
           H
Sbjct: 589 H 589


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,600,526
Number of Sequences: 37544
Number of extensions: 207282
Number of successful extensions: 544
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)