Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1210
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 35 0.021
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0) 33 0.086
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19) 33 0.086
SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.15
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13) 31 0.46
SB_44384| Best HMM Match : Kazal_1 (HMM E-Value=1.4e-21) 29 1.1
SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6) 29 1.1
SB_33512| Best HMM Match : Kazal_1 (HMM E-Value=2.6e-20) 29 1.1
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 1.4
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 29 1.4
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0) 29 1.8
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_8425| Best HMM Match : EGF (HMM E-Value=0) 28 2.4
SB_43571| Best HMM Match : Ank (HMM E-Value=3e-34) 28 3.2
SB_58026| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 3.2
SB_19761| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_34796| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_49805| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-12) 27 4.3
SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_54379| Best HMM Match : AMP-binding (HMM E-Value=0.0023) 27 5.6
SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20) 27 7.4
SB_28917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_8748| Best HMM Match : Astacin (HMM E-Value=0) 27 7.4
SB_25879| Best HMM Match : WAP (HMM E-Value=1.8) 26 9.8
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) 26 9.8
SB_11328| Best HMM Match : PAN (HMM E-Value=7.1e-06) 26 9.8
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0) 26 9.8
SB_21477| Best HMM Match : 7tm_1 (HMM E-Value=2.7e-06) 26 9.8
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 35.1 bits (77), Expect = 0.021
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Frame = +2
Query: 89 VCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKCACC---------PACVTLLGEGATCK 238
VCG+D +N C L CPKN +H G CA C CVT L + A C
Sbjct: 1157 VCGSDKVSYRNKCYMIALNCPKNKYVYVKHEGYCAPCRLAECHKVYAKCVTTLYQTARCV 1216
Query: 239 IYSXEQ--AKPPPLCVRSLSNASKE 307
+ ++ A+ +C + E
Sbjct: 1217 CPTLQECAARKGAVCASDMKTYQSE 1241
Score = 31.9 bits (69), Expect = 0.20
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 83 ALVCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGE 223
A VCGTD + CI C R +HAG+C C V G+
Sbjct: 372 APVCGTDDRTYPSECIMKTSACADKKAVRVKHAGECGPCGTLVCTNGK 419
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Frame = +2
Query: 89 VCGTDYXEK-NPCIQPPLVCPKNTEHRARHAGKCACC 196
VCGTD N C+ C K H G C C
Sbjct: 229 VCGTDKSSYLNECVMKARACRKEKSVTVAHRGFCGAC 265
Score = 26.6 bits (56), Expect = 7.4
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +2
Query: 83 ALVCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSXEQA 259
+ VCG++ N C+ C + E +H G C C V E K Y E
Sbjct: 966 SFVCGSNGKTYTNECLLKVDSCAEQKEISVKHKGACDACSNHVCEENEDCDKKTYQSECH 1025
Query: 260 KPPPLCVRSLS 292
C S
Sbjct: 1026 MKEEACTEKKS 1036
>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 293
Score = 33.1 bits (72), Expect = 0.086
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +2
Query: 89 VCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKCA-----CCPAC 205
VCG+D NPC+ VC N + R +H G C C P C
Sbjct: 129 VCGSDGKTYDNPCVFKIAVCQMNGQLRLKHRGACGSRPDKCAPIC 173
Score = 32.7 bits (71), Expect = 0.11
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +2
Query: 89 VCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGA-TCKI 241
VCG+D NPC+ C N +H GKC +C +G CK+
Sbjct: 180 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKM 232
>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
Length = 173
Score = 33.1 bits (72), Expect = 0.086
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +2
Query: 89 VCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGA-TCKIYSXEQAK 262
VCG+D NPC+ C N +H GKC +C +G CK+ +
Sbjct: 37 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKMIGNK--- 93
Query: 263 PPPLCVRSLSNASKEL 310
P C+R A ++
Sbjct: 94 --PRCMRPPQTACSKV 107
>SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 32.3 bits (70), Expect = 0.15
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 66 RQQRTVLWYVVQTTXKKIHAYSHHLFALRTLSIAPD 173
R +R VLW V + + + A+S+ LF+L + + PD
Sbjct: 171 RSERRVLWDVASSKIRAVTAFSNSLFSLNSNAFCPD 206
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 30.7 bits (66), Expect = 0.46
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 140 VCPKNTEHRARHAGKCACCPACVTLLG-EGATCK 238
+CP NT KC CPA ++ G +GAT K
Sbjct: 2764 LCPPNTYQDQEQQSKCHMCPAGLSTFGLQGATSK 2797
>SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)
Length = 340
Score = 30.7 bits (66), Expect = 0.46
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 140 VCPKNTEHRARHAGKCACCPACVTLLG-EGATCK 238
+CP NT KC CPA ++ G +GAT K
Sbjct: 65 LCPPNTYQDQEQQSKCHMCPAGLSTFGLQGATSK 98
>SB_44384| Best HMM Match : Kazal_1 (HMM E-Value=1.4e-21)
Length = 85
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 89 VCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKC 187
VCG+D NPC+ C N +H GKC
Sbjct: 51 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKC 84
>SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6)
Length = 410
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 51 WWHALRQQRTVLWYVVQTTXKKIHAYSHH 137
W HA R +VLW+++++ KK++ + H
Sbjct: 135 WSHARRNFGSVLWWLLESRIKKVNKANRH 163
>SB_33512| Best HMM Match : Kazal_1 (HMM E-Value=2.6e-20)
Length = 87
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +2
Query: 89 VCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKCACCP 199
VCG+D N C+ C NT R G C CP
Sbjct: 10 VCGSDNNTYDNECLMRQQACVANTTVAVRRKGDCEPCP 47
>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 320
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +2
Query: 89 VCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKCACCP 199
VCGTD N C+ C N R G C CP
Sbjct: 172 VCGTDNNTYDNECLMRQQACVANATVAVRRKGHCEPCP 209
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = +2
Query: 119 PCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSXEQAKPPPLC 277
P +PP C GKC C P C +G K + PPP C
Sbjct: 3183 PTTRPPCECKDGETGVLAEDGKCDCPPKC----DDGRKPKFVNNRWKCPPPEC 3231
>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 541
Score = 28.7 bits (61), Expect = 1.8
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Frame = +2
Query: 14 KNFKMKTLIFIMLVACVASAAYGALVCGTDYXEKNPCIQPPLVCPKNTEHRARHAGKCAC 193
K+ K ++ FIM C + + +KN C++ P +C T + G C
Sbjct: 237 KSCKKTSIYFIMFRYCQSLLSILCSAYTLCILDKNECVETPGIC--KTGNCTNIEGSYTC 294
Query: 194 -CPACVTLLGEGATCKIYSXEQAKPPPLCVRSLSN 295
CP + +C + E K P LC N
Sbjct: 295 TCPVGYAPTRDSPSCSDIN-ECKKNPELCPYGCKN 328
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +2
Query: 86 LVCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKCACC 196
LVCGTD N C+ C N+ + + G C C
Sbjct: 1519 LVCGTDNITYSNECLMKYQACRTNSALKVKRKGDCDVC 1556
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = +2
Query: 89 VCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSXEQAKP 265
VCG+D N C+ C NT R G C C +TCK + +P
Sbjct: 1217 VCGSDNNTYDNECLMRQQACVANTTVAVRRKGDCDPCSNVTCDSPPYSTCK---AQDDQP 1273
Query: 266 PPLCV 280
+CV
Sbjct: 1274 TCVCV 1278
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 83 ALVCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKCACC 196
A VCGT++ N C+ C N+ R G+C C
Sbjct: 1799 AEVCGTNWKTYTNECMMRKQACMNNSMVTVRSIGRCDPC 1837
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +2
Query: 89 VCGTDYXE-KNPCIQPPLVCPKNTEHRARHAGKCACC 196
VCG+D N C+ C N R+ G C C
Sbjct: 1660 VCGSDGKTYDNECVLRMAACESNRTLAVRNEGNCGLC 1696
>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 77 YGALVCGTDYXEKNPCIQPPLVCPKNTEHRARHAG 181
YG Y EK+P + PP V PK+ AR G
Sbjct: 884 YGKTFRLNGYNEKSPKVSPPPVKPKSYSPEARWCG 918
>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = +2
Query: 71 AAYGALVCGTDYXEKNPCIQP--PLVCPKNT-EHRARHAGKCACC---PACVTLLGEG 226
AA G+ VC + C P P+ C T + R+ CA PAC T LGEG
Sbjct: 310 AADGSCVCAAGWGGST-CSLPECPITCTSGTCDLTVRYCSGCAAGFTGPACNTSLGEG 366
>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
Length = 1955
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 125 IQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGA 229
++P L CPK T A C+ CP + G GA
Sbjct: 390 VEPCLPCPKGTYQTAIGQMSCSECPGTKSTHGPGA 424
>SB_43571| Best HMM Match : Ank (HMM E-Value=3e-34)
Length = 584
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 206 VTLLGE-GATCKIYSXEQAKPPPLCVRSLSNASKELA 313
+T GE G CK E +P P CV +++ S EL+
Sbjct: 24 ITPAGERGMCCKAIKLEPERPDPPCVDKVTHCSIELS 60
>SB_58026| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 850
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +2
Query: 95 GTDYXEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATC 235
GT E C L CP+ T R A C+ CP E +C
Sbjct: 506 GTMQSESVACCWECLQCPEGTVTSIRGATNCSTCPVTQKSNRERTSC 552
>SB_19761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 242 KSCKLHLXQVKLH-KRDNKHTFQRVWRDAQCS 150
K+ K H+ VK H KR N TF ++ QC+
Sbjct: 27 KTVKFHVFSVKFHEKRSNSTTFGQIPPSRQCT 58
>SB_34796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.5 bits (58), Expect = 4.3
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 1 EKRIQKFQNENVDFYNAGGMRCVSSVRCFGMWY 99
+ +Q+FQ +VD + C+ + C +W+
Sbjct: 53 DPNVQRFQRSSVDTFLVSSSLCLGDLCCIKLWH 85
>SB_49805| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-12)
Length = 74
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 61 RCVSSVRCFGMWYRLLXKKSMHT 129
+C V+CF Y+L KS+HT
Sbjct: 20 QCCQCVKCFSTLYKLKSHKSIHT 42
>SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 116 NPCIQPPLVCPKNTEHRARHAGKCACCPACV 208
N C+ P L C N E+R R K CC + +
Sbjct: 162 NSCLNPFLYCLTNKEYR-REFTKLLCCKSAI 191
>SB_54379| Best HMM Match : AMP-binding (HMM E-Value=0.0023)
Length = 277
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -2
Query: 344 PXNEIDYTXLVLTLLMHLRGSLHTAEGVSPVPSNKSCKLHLXQVKLHKRDNKH 186
P + I + ++ LRG + + + PS K + L + ++ KR KH
Sbjct: 223 PQDIIQFVSENISPQKRLRGGVEIVDSIPKTPSGKILRRQLREQEVEKRKMKH 275
>SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)
Length = 525
Score = 26.6 bits (56), Expect = 7.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 89 VCGTDYXEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGAT 232
VC T N ++P CP +T + C C +T LG+G T
Sbjct: 301 VCPTGKSSSNG-LEPCRSCPFDTYQNKAQSTSCIPCGNGLTTLGKGMT 347
>SB_28917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 26.6 bits (56), Expect = 7.4
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Frame = +2
Query: 65 ASAAYGALVCGTDYXEKNPCIQPPLVCPKNTEHRARHA---GKCACCPACVTLLGEGATC 235
AS + Y NPC Q + C + RA + GKC C P + + A C
Sbjct: 84 ASEKFKPNTSSNHYSIPNPCDQ--MKCSNGGKCRANYVDNTGKCHCTPDFIGDTCDTAAC 141
Query: 236 KIYSXE 253
+ + E
Sbjct: 142 EAFGME 147
>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
Length = 757
Score = 26.6 bits (56), Expect = 7.4
Identities = 27/94 (28%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Frame = +2
Query: 56 ACVASAAYGALVCGTDYXEKNPC--IQPPLVC----PKNTEHRARHAGKCACCPACVTLL 217
AC ASAA +L G + C PP C P + ACC L
Sbjct: 402 ACCASAA-PSLTAGQASTGSSCCQSAAPPPCCMTANPGTNTQVGLQTPEAACCATVTPSL 460
Query: 218 GEGATCKIYSXEQAK-PPPLCVRSLSNASKELAL 316
G S Q+ PPP C+ KE+ L
Sbjct: 461 TAGQASMGSSCCQSPAPPPCCMTLKPGPEKEIEL 494
>SB_25879| Best HMM Match : WAP (HMM E-Value=1.8)
Length = 260
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 26 MKTLIFIMLVACVASAAY 79
MKTLI I ++A VASA Y
Sbjct: 1 MKTLIVICMLAAVASATY 18
>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
Length = 1399
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 223 RCNLQDLFXGTGETPSAVCKEP 288
RC D + G G++ S +CK+P
Sbjct: 820 RCECADGYRGDGKSCSPICKQP 841
>SB_11328| Best HMM Match : PAN (HMM E-Value=7.1e-06)
Length = 435
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 185 CACCPACVTLLGEGATCKIYSXEQAKPP 268
CA CV++ GATC++ S Q P
Sbjct: 53 CASANGCVSINHYGATCELNSKSQFTAP 80
>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 376
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/58 (22%), Positives = 24/58 (41%)
Frame = +2
Query: 14 KNFKMKTLIFIMLVACVASAAYGALVCGTDYXEKNPCIQPPLVCPKNTEHRARHAGKC 187
K+FK + + ++ + CG + +K+ + LV H R+ GKC
Sbjct: 272 KHFKRSSTLSTHMLIHADIRPFSCEFCGKRFHQKSDMKKHTLVHTGEKPHECRYCGKC 329
>SB_21477| Best HMM Match : 7tm_1 (HMM E-Value=2.7e-06)
Length = 348
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 271 AVCKEPLKCIKRVSTXLV*SISL 339
A+ K+PLKC K +T V +SL
Sbjct: 43 AIWKDPLKCFKSAATYYVVGLSL 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,176,636
Number of Sequences: 59808
Number of extensions: 238871
Number of successful extensions: 678
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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