Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1210
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   3.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   9.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   9.1  
AY078399-1|AAL83702.1|   31|Apis mellifera major royal jelly pro...    20   9.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   9.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   9.1  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 227 HLXQVKLHKRDNKHTFQRVWRDAQ 156
           ++ +VK  K  +KH  Q  W D +
Sbjct: 325 YIPKVKNKKAGSKHLLQNTWLDPE 348


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -2

Query: 296 HLRGSLHTAEGVSPVPSNKSCKLHLXQVKLHKRDNKHTFQRVWRDAQCS 150
           HLR   H  EG  P   N   K      +L +    HT ++ ++   CS
Sbjct: 80  HLRS--HGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCS 126


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 164 RARHAGKCACCPACVTLLGEGAT 232
           + RH     CC  C  L G G++
Sbjct: 3   KGRHVVMSCCCWCCDNLGGPGSS 25


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 34  VDFYNAGGMRCVSSVRCFGMWYRL 105
           +D YNA  M   S+V    M YR+
Sbjct: 176 LDVYNADIMAATSNVIIASMQYRV 199


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 34  VDFYNAGGMRCVSSVRCFGMWYRL 105
           +D YNA  M   S+V    M YR+
Sbjct: 176 LDVYNADIMAATSNVIIASMQYRV 199


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 92  CGTDYXEKNPCIQPPLVC 145
           CGTDY  +       LVC
Sbjct: 202 CGTDYFNRGLLSASYLVC 219


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 10  IQKFQNENVDFYNAGGM 60
           IQ F N+N  FY  G M
Sbjct: 307 IQFFANKNQKFYERGIM 323


>AY078399-1|AAL83702.1|   31|Apis mellifera major royal jelly
          protein MRJP2 protein.
          Length = 31

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 41 FIMLVACVASAAYGALV 91
          ++ +VAC+  A  GA+V
Sbjct: 4  WLFMVACLGIACQGAIV 20


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 92  CGTDYXEKNPCIQPPLVC 145
           CGTDY  +       LVC
Sbjct: 78  CGTDYFNRGLLSASYLVC 95


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
          protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 41 FIMLVACVASAAYGALV 91
          ++ +VAC+  A  GA+V
Sbjct: 4  WLFMVACLGIACQGAIV 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,418
Number of Sequences: 438
Number of extensions: 1885
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)