Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1210
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin ... 31 0.37
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 29 0.86
At1g54890.1 68414.m06267 late embryogenesis abundant protein-rel... 29 1.5
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 28 2.0
At5g28040.1 68418.m03378 expressed protein contains Pfam profil... 27 3.5
At1g55330.1 68414.m06321 arabinogalactan-protein (AGP21) 27 4.6
At3g11810.1 68416.m01447 expressed protein 27 6.1
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 26 8.0
At1g78850.1 68414.m09191 curculin-like (mannose-binding) lectin ... 26 8.0
>At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin
family protein low similarity to Ser/Thr protein kinase
[Zea mays] GI:2598067; contains Pfam profile PF01453:
Lectin (probable mannose binding)
Length = 443
Score = 30.7 bits (66), Expect = 0.37
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 179 GKCACCPACVTLLGEGATCKIYSXEQAKP 265
G+C CP+ + LLG TCKI S P
Sbjct: 330 GQCNACPSDIGLLGWDETCKIPSLASCDP 358
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 29.5 bits (63), Expect = 0.86
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = +2
Query: 44 IMLVACVASAAYGALVCGTDYXEKNP-CIQPPLVCP--KNTEHRARHAGKCACCPACVTL 214
++ ++C + + CGT+ +K P C + + P ++ +++ H CP C L
Sbjct: 457 MVTISCACGETHFEVPCGTETNQKPPRCRKLCHITPLCRHGQNQKPHKCHYGACPPCRLL 516
Query: 215 LGE----GATCKIYSXEQAKPPP 271
E G CK+ +PPP
Sbjct: 517 CDEEYPCGHKCKL-RCHGPRPPP 538
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 137 LVCPKNTEHRARHAGKCACCP 199
L C K+ R HAG+C CP
Sbjct: 301 LNCGKHVCERGCHAGECGLCP 321
>At1g54890.1 68414.m06267 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein (EMB7) GI:1350543 from
[Picea glauca]
Length = 347
Score = 28.7 bits (61), Expect = 1.5
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 38 IFIMLVACVASAAY-GALVCGTDYXEKNPCIQPPLVCPKNTEHRARHAGKC-ACCPACVT 211
+ +ML AC+ AL T + K+PC CPK + G AC C
Sbjct: 13 LVVMLYACIVVVQLEAALETKTCFQRKSPCFLKKQTCPKQCPSFSPPNGSTKACVIDCFN 72
Query: 212 LLGEGATCK 238
+ + ATC+
Sbjct: 73 PICK-ATCR 80
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 44 IMLVACVASAAYGALVCGTDYXEKNPCIQPPLVCPKNTE 160
+ L C+A + G L+ G+ KNP +P L P NT+
Sbjct: 81 VYLPTCLAGLSTGKLLVGSSNL-KNPAAEPKLGIPVNTK 118
>At5g28040.1 68418.m03378 expressed protein contains Pfam profile:
PF04504 protein of unknown function, DUF573
Length = 427
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -2
Query: 275 TAEGVSPVPSNKSCKLHLXQVKLHKR----DNKHTFQRVWRD 162
+A V+ +PS+ K H +H+R D++ FQR+W D
Sbjct: 90 SAVPVASIPSDSDQKWHRMTEIVHQRPPIDDSRRLFQRLWTD 131
>At1g55330.1 68414.m06321 arabinogalactan-protein (AGP21)
Length = 58
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 23 KMKTLIFIMLVACVASAAYGALV 91
KMK ++FIM+VA SAA A V
Sbjct: 5 KMKMMVFIMVVAVAFSAATAATV 27
>At3g11810.1 68416.m01447 expressed protein
Length = 348
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 84 LWYVVQTTXKKIHAYSHHLFALRTLSIAP 170
LW ++ + + I+A+S H AL L + P
Sbjct: 15 LWIILSESKRIINAHSRHFLALSVLFLLP 43
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 126 MHGFFSQ*SVPHTKAPYAADATHATSI 46
+HG S + T AP +A+A+H TSI
Sbjct: 470 VHGGLSNIPIASTDAPKSANASHNTSI 496
>At1g78850.1 68414.m09191 curculin-like (mannose-binding) lectin
family protein low similarity to ser/thr protein kinase
from Zea mays [GI:2598067]; contains Pfam lectin
(probable mannose binding) domain PF01453
Length = 441
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 179 GKCACCPACVTLLGEGATCKIYSXEQAKP 265
G+C CP+ LLG TCK S P
Sbjct: 330 GQCNACPSDKGLLGWDETCKSPSLASCDP 358
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,276,592
Number of Sequences: 28952
Number of extensions: 154183
Number of successful extensions: 426
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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