Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1208
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    29   0.58 
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    28   1.3  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   2.3  
SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27...    26   4.1  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    25   7.1  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 219 QVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQ 350
           ++ I+   ++ ++  S++ E YD    EI++L      FD SV+
Sbjct: 838 KISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSVE 881


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 631 FANFCRFSFGXMRKSI--FHDEWDYFPMFTWSYRA*SWQMTLHFFXKR 494
           F   C FS    R +   F+D+W  +  +TW   A +W   +H+F  R
Sbjct: 337 FEGVCNFSAEITRFADRNFYDDW--WNCWTWDQFARTWNKPVHYFLLR 382


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 597 CENPFFMMNGIIFPCS 550
           C+N +  MNGI+ PCS
Sbjct: 49  CDNLYLDMNGIVHPCS 64


>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 471 SLIYNNFENILTILPICNISKFNGGS 394
           SL Y    NILT  PI   +K  GGS
Sbjct: 19  SLAYKKASNILTFPPIRTSTKHGGGS 44


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
 Frame = +2

Query: 359 REERQKCFETSQLPPLNLD------MLQIGN--IVNIFSKLLY 463
           R+E QKCFET+ +  L +       +LQ  N  +VNI S L Y
Sbjct: 127 RQELQKCFETNVIGQLAITSALFPLLLQDPNPHVVNIASSLAY 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,368
Number of Sequences: 5004
Number of extensions: 48085
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)