Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1208
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    31   0.60 
11_06_0080 - 19880319-19880957,19881800-19881948,19882266-198835...    28   7.4  
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489...    28   7.4  
03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693     27   9.7  
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609...    27   9.7  

>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 231 DSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVNYHH 404
           D+N    +DK S  C   D++ DE  D+T  + P DN    ID  +  N  + ++  H
Sbjct: 467 DTNLSSEVDKLSKSCNPTDQNNDEKNDVTSAHSPKDNMDNDIDDNRNANNKEEIDNVH 524


>11_06_0080 -
           19880319-19880957,19881800-19881948,19882266-19883589,
           19883766-19883953,19884034-19884499
          Length = 921

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +1

Query: 532 KPDSSK*TWENNPIHHEK 585
           K D+S+ ++ENNP+H+EK
Sbjct: 553 KLDASQVSFENNPVHYEK 570


>06_03_1450 +
           30246702-30247346,30248603-30248689,30248789-30248920,
           30249016-30249162,30250375-30250440,30250519-30250629,
           30251551-30251584,30251667-30251743,30251829-30251906
          Length = 458

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 365 LRVYYLNRIVKWKIIEG*IFYFVSILIIHFTQETIFIK-*SYT 240
           LR+Y L  + +W +++  IF F S   + F    I +K  SYT
Sbjct: 232 LRIYPLETVTRWDVLDSSIFAFWSKSSVDFEARRIRLKSNSYT 274


>03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693
          Length = 661

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 243 IRLLDKYSFLCEMYDEDADEIKDLTLNYFPF 335
           +  LD+   +C+MYD D   I D+T+    F
Sbjct: 549 VESLDELYMVCQMYDSDMKTIYDVTVYRMDF 579


>01_05_0106 + 18160018-18160243,18160423-18160470,18160816-18160974,
            18162056-18162219,18162778-18162885,18163695-18163865,
            18163945-18164478,18164574-18164648,18164724-18164852,
            18164975-18165049,18165129-18165338,18165529-18165681,
            18165763-18165986,18166305-18166422,18166518-18166656,
            18166745-18166946,18166981-18167149,18167190-18167267,
            18167268-18167408,18167717-18167819,18169024-18169324,
            18169450-18169518,18169602-18169626,18170946-18170975
          Length = 1216

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +2

Query: 329  SI*QFGSNNRREERQKCFETSQLPPLNLDMLQIGNIVNIFSKLLYIKDCA--PAT--RKT 496
            SI  FG+  +  +    F+ +  PP   D+ +   I N+F + L   D    PAT  R  
Sbjct: 1026 SIEAFGAVAQHFKNDMIFKLTSAPPTGNDIERRREIANVFCEALRAVDATDLPATSVRDL 1085

Query: 497  LXKKVQSHLP*LSPIAPS 550
            L   +Q+ L  L  + P+
Sbjct: 1086 LLPSIQNLLKDLDALDPA 1103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,087,098
Number of Sequences: 37544
Number of extensions: 244717
Number of successful extensions: 436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)