Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1208
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)                  35   0.050
SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7)             29   3.3  
SB_19525| Best HMM Match : BphX (HMM E-Value=9)                        29   3.3  

>SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)
          Length = 93

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 255 DKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKR 389
           ++++FL E YD  A   +   L ++  DNSV++ D K  +  LKR
Sbjct: 5   ERFAFLAEWYDPQAALTRKYQLLFYASDNSVEMYDIKNRRLFLKR 49


>SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -2

Query: 407 LMVVVDSFQNIFAFLRVYYLNRIVKWKIIEG*IFYFVSILIIHFTQETIFIK*SYTIAI 231
           ++V+   + N    L V+Y NR++   ++     YFV +L +H+T   I +   YT  +
Sbjct: 50  VIVLPVRYTNRVIVLPVHYTNRVI---VLPVNYTYFVIVLPVHYTNRVIVLPVHYTYLV 105


>SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7)
          Length = 251

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 255 DKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDA---KKGKNVLKRVN 395
           D Y FL    + + +E  D+   YF  +  V+II +   +KG N   R N
Sbjct: 185 DVYEFLRAEDEAEVEEFNDILYEYFGMNARVEIITSSRRRKGNNAKSRKN 234


>SB_19525| Best HMM Match : BphX (HMM E-Value=9)
          Length = 112

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 371 QKCFETSQLPPLNLDMLQIGNIVNIFSK-LLYIKDCAPAT 487
           +K F+T+ +     DM  IG I+N FSK   Y+ +  P T
Sbjct: 16  EKPFDTNSIGERTFDMNSIGRILNRFSKDTSYLDESLPTT 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,260,644
Number of Sequences: 59808
Number of extensions: 313403
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)