Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1207
(299 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 104 3e-24
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 102 1e-23
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 30 0.063
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 28 0.26
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 2.4
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 3.1
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 24 4.2
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 24 4.2
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 24 4.2
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 24 5.5
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 24 5.5
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 23 7.3
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 23 7.3
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 7.3
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 23 9.6
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 23 9.6
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 104 bits (249), Expect = 3e-24
Identities = 46/81 (56%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Frame = +2
Query: 26 MAKRTKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVGIWXC--K 199
M KRTKKVG+TGKY RYGASLR+ +K+EV QH++Y C F G++ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60
Query: 200 RCKRTVAGGAWVFSTTAAYHA 262
CK+ +AGGAW +T AA A
Sbjct: 61 GCKKVLAGGAWTVTTAAATSA 81
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 102 bits (244), Expect = 1e-23
Identities = 46/81 (56%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
Frame = +2
Query: 26 MAKRTKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVGIWXC--K 199
M KRTKKVG+TGKY RYGASLR+ +K+EV QH++Y C F G+ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60
Query: 200 RCKRTVAGGAWVFSTTAAYHA 262
C +T+AGGAW +T AA A
Sbjct: 61 GCSKTLAGGAWTVTTAAATSA 81
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 30.3 bits (65), Expect = 0.063
Identities = 17/71 (23%), Positives = 27/71 (38%)
Frame = +2
Query: 62 KYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVGIWXCKRCKRTVAGGAWVFS 241
K+VT +R + H Y +A++ + + C + + GAW S
Sbjct: 57 KWVTSNNIKIRVQVDETFANNHLIYKNDLRSNEAVRFTTTNEGTHRICYLSTSDGAWFSS 116
Query: 242 TTAAYHADLLS 274
T H DL S
Sbjct: 117 TKTRLHVDLAS 127
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 28.3 bits (60), Expect = 0.26
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 219 ATVLLHRLQXQMPTQXRFIASXPQNEQVYFACWVTS 112
+T +L ++ Q+ T F+A +NE +FA W TS
Sbjct: 69 STSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.0 bits (52), Expect = 2.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 68 HICQ*FQPFWYVWPF 24
++ Q FQ WY WPF
Sbjct: 1253 YLVQDFQRLWYHWPF 1267
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 111 IFLXILRREAP*RVTYLPVIPTFLVRLAILVNL 13
I L I + P Y+P++P L RL L N+
Sbjct: 253 IMLEICSSQLPFVEQYMPILPLLLERLKSLQNM 285
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 24.2 bits (50), Expect = 4.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 135 YFACWVTSIFLXILRREAP*RVTYLPVIPTFLVRLAILVNL 13
YF WV S ++R E R + I T++ A+L+ L
Sbjct: 202 YFVYWVISFPFHLIRPEYLQRFFLIKSISTYIACFAMLIFL 242
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 24.2 bits (50), Expect = 4.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 6 YRRGLPKWPNVPKRLELL 59
YR+ LP P++P R+E L
Sbjct: 427 YRKRLPHSPSMPSRVEFL 444
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 4.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 13 EVYQNGQTYQKGWNYWQICYTLRCLST*NGQKDGSNPTRKVYLL 144
EV ++GQ Y + W + T ++T + +P R VYL+
Sbjct: 178 EVIRDGQEYNVMADIWSLGITAYEIATGSPPHAKEDPFRAVYLI 221
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 13 EVYQNGQTYQKGWNYWQICYTLRCLST*N 99
EVYQ +K +N+ Q+C L T N
Sbjct: 499 EVYQEKGDVEKAFNHLQVCNLPELLRTSN 527
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 28 GQTYQKGWNYWQICYTLRCLS--T*NGQKDGSNPT 126
G QK W +W Y+L S T +G++ +PT
Sbjct: 387 GPRGQKAWEWWSASYSLFTSSNATYSGEQKTYSPT 421
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 23.4 bits (48), Expect = 7.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +2
Query: 164 MKRSCVGIWXCKRCKR 211
+K C +W C+ CK+
Sbjct: 28 LKLKCDRVWPCENCKK 43
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 157 GCYETXLCRHLXL*AMQEDCSRRSLGILH 243
G + LC+ L + E C S+G+LH
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 183 PTQXRFIASXPQNEQVYFACWVTSIF 106
P Q +F+ +NE +Y A TSIF
Sbjct: 253 PCQLKFLKLKFENEILYTAMHTTSIF 278
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 23.0 bits (47), Expect = 9.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 146 FXGKDAMKRSCVGIWXCKRCKRTVAGGAWVFSTTAAYH 259
F G SCVGI + ++ + STT++YH
Sbjct: 147 FFGVGNGNPSCVGIAVLAVLPQPISSSSTYNSTTSSYH 184
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 64 FASNSNLFGTFGHFGKPL 11
FA+N LFG HF + L
Sbjct: 149 FATNEKLFGVKSHFDEDL 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,231,467
Number of Sequences: 5004
Number of extensions: 21442
Number of successful extensions: 64
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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