Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1207
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803...   108   9e-25
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603...   107   2e-24
07_01_0697 + 5265079-5266281                                           30   0.29 
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928           28   1.2  
06_03_0075 - 16253719-16253841,16255076-16255195,16255752-162558...    27   2.7  
02_01_0679 - 5048653-5051394                                           26   4.7  
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704...    25   8.3  
02_05_1160 + 34580680-34582659                                         25   8.3  

>05_07_0070 +
           27479654-27479672,27479864-27479922,27480339-27480378,
           27480477-27480565,27481065-27481147,27481219-27481282
          Length = 117

 Score =  108 bits (259), Expect = 9e-25
 Identities = 48/77 (62%), Positives = 57/77 (74%)
 Frame = +2

Query: 23  KMAKRTKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVGIWXCKR 202
           ++ KRTKK GI GKY TRYGASLRK  KKMEV+QH+KY C F GK A+KR  VGIW CK 
Sbjct: 25  ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84

Query: 203 CKRTVAGGAWVFSTTAA 253
           C +  AGGA+  +T +A
Sbjct: 85  CGKVKAGGAYTMNTASA 101


>01_06_0260 -
           27959188-27959251,27959342-27959424,27960220-27960308,
           27960388-27960427,27960938-27960981,27961240-27961288
          Length = 122

 Score =  107 bits (256), Expect = 2e-24
 Identities = 48/74 (64%), Positives = 55/74 (74%)
 Frame = +2

Query: 32  KRTKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVGIWXCKRCKR 211
           KRTKK GI GKY TRYGASLRK  KKMEV+QH+KY C F GK A+KR  VGIW CK C +
Sbjct: 33  KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92

Query: 212 TVAGGAWVFSTTAA 253
             AGGA+  +T +A
Sbjct: 93  VKAGGAYTMNTASA 106


>07_01_0697 + 5265079-5266281
          Length = 400

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 158 DAMKRSCVGIWXCKRCKRTVAGGAWVFSTTAAYH 259
           DA++R C G W   +C R   GG   F   A YH
Sbjct: 19  DALQRFC-GAWRDMQCSRRGGGGGDAFVVGAVYH 51


>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
          Length = 244

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 199 AMQEDCSR--RSLGILHYCCLSCRSAV-RRLRE 288
           A  EDC R   + GIL Y C SCR+ V  ++RE
Sbjct: 145 AQDEDCFRWNNAAGILCYGCESCRAGVMEKVRE 177


>06_03_0075 -
           16253719-16253841,16255076-16255195,16255752-16255895,
           16256323-16256529,16256832-16256876,16257262-16257313,
           16259756-16259831,16260785-16260893,16260992-16261183
          Length = 355

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 24/78 (30%), Positives = 33/78 (42%)
 Frame = +2

Query: 5   VSERFTKMAKRTKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVG 184
           +++RFT  A R  KVG+  K V  Y    RK  ++   +       S   K A  RS V 
Sbjct: 44  LADRFTASAARAGKVGVRSKQVW-YWFQNRKYSQRSRNSTKMLPAASGDHKSAFARSSVQ 102

Query: 185 IWXCKRCKRTVAGGAWVF 238
               K  K ++ GG   F
Sbjct: 103 ----KSVKNSLEGGQLEF 116


>02_01_0679 - 5048653-5051394
          Length = 913

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
 Frame = +3

Query: 18  LPKWPNVPKRLELLANM--LHVTV---PLYVKWXK-RWK 116
           LP    VPK LELLA++  L+VT+    L V+W +  WK
Sbjct: 864 LPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902


>10_03_0012 -
           7037088-7037282,7037453-7037954,7038079-7038081,
           7040633-7041213
          Length = 426

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +1

Query: 100 GQKDGSNPTRKVYLLILXXGCYETXLCRHLXL*AMQEDCSRRSLGILHYC---CLSCRSA 270
           G  +G++P ++  + +          CRH+    M  +C++    +L Y    C  CR  
Sbjct: 333 GDTEGNDPGKECVICLSEPRDTTVLPCRHM---CMCSECAK----VLRYQTNRCPICRQP 385

Query: 271 VRRLREVK 294
           V RL E+K
Sbjct: 386 VERLLEIK 393


>02_05_1160 + 34580680-34582659
          Length = 659

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 49  WNYWQICYTLRCLST 93
           WN+W +C+  + +ST
Sbjct: 590 WNFWDLCFCCKQMST 604


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,207,888
Number of Sequences: 37544
Number of extensions: 147279
Number of successful extensions: 312
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)