BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS1207 (299 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 108 9e-25 01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 107 2e-24 07_01_0697 + 5265079-5266281 30 0.29 05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928 28 1.2 06_03_0075 - 16253719-16253841,16255076-16255195,16255752-162558... 27 2.7 02_01_0679 - 5048653-5051394 26 4.7 10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 25 8.3 02_05_1160 + 34580680-34582659 25 8.3 >05_07_0070 + 27479654-27479672,27479864-27479922,27480339-27480378, 27480477-27480565,27481065-27481147,27481219-27481282 Length = 117 Score = 108 bits (259), Expect = 9e-25 Identities = 48/77 (62%), Positives = 57/77 (74%) Frame = +2 Query: 23 KMAKRTKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVGIWXCKR 202 ++ KRTKK GI GKY TRYGASLRK KKMEV+QH+KY C F GK A+KR VGIW CK Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84 Query: 203 CKRTVAGGAWVFSTTAA 253 C + AGGA+ +T +A Sbjct: 85 CGKVKAGGAYTMNTASA 101 >01_06_0260 - 27959188-27959251,27959342-27959424,27960220-27960308, 27960388-27960427,27960938-27960981,27961240-27961288 Length = 122 Score = 107 bits (256), Expect = 2e-24 Identities = 48/74 (64%), Positives = 55/74 (74%) Frame = +2 Query: 32 KRTKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVGIWXCKRCKR 211 KRTKK GI GKY TRYGASLRK KKMEV+QH+KY C F GK A+KR VGIW CK C + Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92 Query: 212 TVAGGAWVFSTTAA 253 AGGA+ +T +A Sbjct: 93 VKAGGAYTMNTASA 106 >07_01_0697 + 5265079-5266281 Length = 400 Score = 30.3 bits (65), Expect = 0.29 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 158 DAMKRSCVGIWXCKRCKRTVAGGAWVFSTTAAYH 259 DA++R C G W +C R GG F A YH Sbjct: 19 DALQRFC-GAWRDMQCSRRGGGGGDAFVVGAVYH 51 >05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928 Length = 244 Score = 28.3 bits (60), Expect = 1.2 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%) Frame = +1 Query: 199 AMQEDCSR--RSLGILHYCCLSCRSAV-RRLRE 288 A EDC R + GIL Y C SCR+ V ++RE Sbjct: 145 AQDEDCFRWNNAAGILCYGCESCRAGVMEKVRE 177 >06_03_0075 - 16253719-16253841,16255076-16255195,16255752-16255895, 16256323-16256529,16256832-16256876,16257262-16257313, 16259756-16259831,16260785-16260893,16260992-16261183 Length = 355 Score = 27.1 bits (57), Expect = 2.7 Identities = 24/78 (30%), Positives = 33/78 (42%) Frame = +2 Query: 5 VSERFTKMAKRTKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVG 184 +++RFT A R KVG+ K V Y RK ++ + S K A RS V Sbjct: 44 LADRFTASAARAGKVGVRSKQVW-YWFQNRKYSQRSRNSTKMLPAASGDHKSAFARSSVQ 102 Query: 185 IWXCKRCKRTVAGGAWVF 238 K K ++ GG F Sbjct: 103 ----KSVKNSLEGGQLEF 116 >02_01_0679 - 5048653-5051394 Length = 913 Score = 26.2 bits (55), Expect = 4.7 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 6/39 (15%) Frame = +3 Query: 18 LPKWPNVPKRLELLANM--LHVTV---PLYVKWXK-RWK 116 LP VPK LELLA++ L+VT+ L V+W + WK Sbjct: 864 LPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902 >10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081, 7040633-7041213 Length = 426 Score = 25.4 bits (53), Expect = 8.3 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Frame = +1 Query: 100 GQKDGSNPTRKVYLLILXXGCYETXLCRHLXL*AMQEDCSRRSLGILHYC---CLSCRSA 270 G +G++P ++ + + CRH+ M +C++ +L Y C CR Sbjct: 333 GDTEGNDPGKECVICLSEPRDTTVLPCRHM---CMCSECAK----VLRYQTNRCPICRQP 385 Query: 271 VRRLREVK 294 V RL E+K Sbjct: 386 VERLLEIK 393 >02_05_1160 + 34580680-34582659 Length = 659 Score = 25.4 bits (53), Expect = 8.3 Identities = 6/15 (40%), Positives = 11/15 (73%) Frame = +1 Query: 49 WNYWQICYTLRCLST 93 WN+W +C+ + +ST Sbjct: 590 WNFWDLCFCCKQMST 604 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,207,888 Number of Sequences: 37544 Number of extensions: 147279 Number of successful extensions: 312 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 307 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 312 length of database: 14,793,348 effective HSP length: 71 effective length of database: 12,127,724 effective search space used: 339576272 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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