Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1207
         (299 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48154| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.23 
SB_40233| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-23)           26   6.5  
SB_33036| Best HMM Match : Ion_trans_2 (HMM E-Value=3e-08)             26   6.5  
SB_6076| Best HMM Match : Defensin_beta (HMM E-Value=2)                26   6.5  
SB_602| Best HMM Match : TSP_1 (HMM E-Value=1e-27)                     26   6.5  
SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_54653| Best HMM Match : Peptidase_M24 (HMM E-Value=0.93)            25   8.6  
SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_48154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 125 HAKYTCSFXGKDAMKRSCVGIWXCKRCK--RTVAGGAWVFSTTAAYHAD 265
           HA Y CS   ++ +K +    +     K  R +    WV  T + YH +
Sbjct: 64  HASYLCSLKRRELLKPNIAQAYQAHHIKNWRKITSDPWVLETASGYHLE 112


>SB_40233| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-23)
          Length = 750

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 176 CVGIWXCKRCKRTVAGG--AWVFSTTAAYHADLLSGGYVK 289
           C+G W     + T   G  AW  + T   + D++ GG+ K
Sbjct: 620 CIGAWIYTNEEGTYLEGTYAWFITFTTIGYGDIVPGGHSK 659


>SB_33036| Best HMM Match : Ion_trans_2 (HMM E-Value=3e-08)
          Length = 298

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 176 CVGIWXCKRCKRTVAGG--AWVFSTTAAYHADLLSGGYVK 289
           C+G W     + T   G  AW  + T   + D++ GG+ K
Sbjct: 168 CIGAWIYTNEEGTYLEGTYAWFITFTTIGYGDIVPGGHSK 207


>SB_6076| Best HMM Match : Defensin_beta (HMM E-Value=2)
          Length = 315

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 74  RYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVG 184
           R   ++RK   K    + +   CS  G+  M +SC+G
Sbjct: 167 RPDTAMRKRDAKQAEEEESYTCCSLNGECGMMKSCIG 203


>SB_602| Best HMM Match : TSP_1 (HMM E-Value=1e-27)
          Length = 590

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = -2

Query: 169 FHSILXXK*ASILCVLGYFHLFXHFT*RGTVTCNIFASNS-----NLFGTFGH--FGKPL 11
           FHS    K  ++  V    ++F  +T +    CN + S+S      ++ TFG+     PL
Sbjct: 394 FHSYCNNKGPTVTIVKKSSYIFGGYTDQSWTGCNCYKSSSKSFMFTIYNTFGYKPAKLPL 453

Query: 10  RY 5
           RY
Sbjct: 454 RY 455


>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 38  TKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTC 142
           T+  GIT    T Y +S +K+  +   T+ A  TC
Sbjct: 19  TRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITC 53


>SB_54653| Best HMM Match : Peptidase_M24 (HMM E-Value=0.93)
          Length = 1104

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 10  GEVYQNGQTYQKGWNYWQICYTLR 81
           G+V +N + ++  W+Y+ I   LR
Sbjct: 928 GDVVENWKDFENSWDYYAIATVLR 951


>SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 164 MKRSCVGIWXCKRCKRTVA 220
           +KR+  G W CK CK+T +
Sbjct: 552 LKRAPKGGWYCKFCKKTTS 570


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,391,809
Number of Sequences: 59808
Number of extensions: 166482
Number of successful extensions: 354
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)