Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1207
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   122   6e-29
AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical...    30   0.35 
Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    28   1.4  
U97007-2|AAB52298.2|  271|Caenorhabditis elegans Hypothetical pr...    26   4.4  
AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical ...    26   5.8  
AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical ...    26   5.8  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  122 bits (293), Expect = 6e-29
 Identities = 53/76 (69%), Positives = 61/76 (80%)
 Frame = +2

Query: 26  MAKRTKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVGIWXCKRC 205
           MAKRTKKVGI GKY TRYGASLRKM KK+EV QH++YTCSF GK+AMKR   GIW C +C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60

Query: 206 KRTVAGGAWVFSTTAA 253
            + VAGGA+V+ T  A
Sbjct: 61  HKVVAGGAYVYGTVTA 76


>AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical
           protein Y111B2A.17 protein.
          Length = 778

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 22/77 (28%), Positives = 28/77 (36%)
 Frame = +2

Query: 32  KRTKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVGIWXCKRCKR 211
           KR K   I        G   R +  K+   +H +Y     G D    S  G   C    R
Sbjct: 67  KRLKSSEIVADEFVTGGVDSRVVLWKLR-GEHVEYVADLTGCDGSVGSVCG---CVEDGR 122

Query: 212 TVAGGAWVFSTTAAYHA 262
            V   AWV  T+  +HA
Sbjct: 123 KVVAAAWVSETSNGFHA 139


>Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical
           protein T13H5.4 protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 4   CIGEVYQNGQTYQKGWNYWQICYTLRCLST*N 99
           C  + Y+  + +QK +N W+  + +RCL   N
Sbjct: 410 CGNQTYKGPKAFQKHFNEWRHSHGMRCLGIPN 441


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +2

Query: 89  LRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVGIWXCKRCKRTVAGGAWVFSTTAAYHADL 268
           L+K  KKM V   A    S    + M  +C G    + C+R + G A +  T  A H D+
Sbjct: 32  LKKSTKKMRVCPVAHCYSSLTAPEPMTSTCEG----ENCQRKIMGNAEILRT--ACHHDI 85

Query: 269 LSGGY 283
               Y
Sbjct: 86  CQHCY 90


>U97007-2|AAB52298.2|  271|Caenorhabditis elegans Hypothetical
           protein ZC196.8 protein.
          Length = 271

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 12  RGLPKWPNVPKRLELLANMLHVTVPLYV 95
           RG+ K    P  ++ +  +LH+ +PL++
Sbjct: 130 RGIMKTVATPAGIQFVETLLHIVIPLFI 157


>AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical
           protein F16B4.2a protein.
          Length = 362

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 167 KRSCVGIWXCKRCKRTVAGGAWVFSTT 247
           K  C+  W C  C +T+   +W F +T
Sbjct: 333 KEKCILDWTCSTCDKTIE--SWYFRST 357


>AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical
           protein F16B4.2b protein.
          Length = 367

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 167 KRSCVGIWXCKRCKRTVAGGAWVFSTT 247
           K  C+  W C  C +T+   +W F +T
Sbjct: 338 KEKCILDWTCSTCDKTIE--SWYFRST 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,901,059
Number of Sequences: 27780
Number of extensions: 123737
Number of successful extensions: 235
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)