Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1207
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   2.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   7.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   7.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 27 WPNVPKRLELLANMLH 74
          WP V K L LL  +LH
Sbjct: 2  WPGVLKLLVLLTFLLH 17


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 27 WPNVPKRLELLANMLH 74
          WP V K L LL  +LH
Sbjct: 2  WPGVLKLLVLLTFLLH 17


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 15  GLPKWPNVPKRLELLANMLHVTVPL 89
           G+P  PN+P  +  +  M  +  P+
Sbjct: 428 GMPPLPNMPGSMPTMPTMPSMAGPI 452


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 230 WVFSTTAAYHADLLSGG 280
           W + TT   HA L +GG
Sbjct: 124 WKYYTTNESHACLSTGG 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,786
Number of Sequences: 438
Number of extensions: 1738
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)