Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1207
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)         109   3e-25
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si...   103   3e-23
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic...    30   0.25 
At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identic...    30   0.25 
At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identic...    30   0.25 
At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogen...    27   3.1  
At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340...    25   7.1  
At5g66050.2 68418.m08318 expressed protein                             25   9.4  
At5g66050.1 68418.m08319 expressed protein                             25   9.4  

>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
          Length = 92

 Score =  109 bits (263), Expect = 3e-25
 Identities = 49/76 (64%), Positives = 57/76 (75%)
 Frame = +2

Query: 26  MAKRTKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVGIWXCKRC 205
           MAKRTKKVGI GKY TRYGAS+RK  KKMEV+QH+KY C F GK  +KR  VGIW CK C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 206 KRTVAGGAWVFSTTAA 253
            +  AGGA+  +T +A
Sbjct: 61  GKVKAGGAYTMNTASA 76


>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
           similar to putative 60S ribosomal protein L37a
           GB:AAD28753 [Gossypium hirsutum]
          Length = 92

 Score =  103 bits (246), Expect = 3e-23
 Identities = 47/76 (61%), Positives = 54/76 (71%)
 Frame = +2

Query: 26  MAKRTKKVGITGKYVTRYGASLRKMXKKMEVTQHAKYTCSFXGKDAMKRSCVGIWXCKRC 205
           M KRTKK  I GKY TRYGASLRK  KKMEV+QH KY C F GK ++KR  VGIW CK C
Sbjct: 1   MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 206 KRTVAGGAWVFSTTAA 253
            +  AGGA+  +T +A
Sbjct: 61  GKVKAGGAYTMNTASA 76


>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 545

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 10  GEVYQNGQTYQKGWNYW 60
           G  Y +G+TYQ  W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277


>At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 428

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 10  GEVYQNGQTYQKGWNYW 60
           G  Y +G+TYQ  W+YW
Sbjct: 180 GSCYSSGETYQPRWDYW 196


>At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 516

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 10  GEVYQNGQTYQKGWNYW 60
           G  Y +G+TYQ  W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277


>At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogenase
           family protein contains Pfam profile PF00107:
           oxidoreductase, zinc-binding dehydrogenase family
          Length = 386

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 220 RRSLGILHYCCLSCRSAVRRLREVK 294
           RR   +LHYC L+ +S V ++  V+
Sbjct: 16  RRETPLLHYCSLTTKSPVYQINRVR 40


>At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340:
           Protein of unknown function (DUF740)
          Length = 521

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 22  QNGQTYQKGWNYW 60
           ++G+ + KGWN+W
Sbjct: 347 KSGKNWSKGWNFW 359


>At5g66050.2 68418.m08318 expressed protein 
          Length = 246

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 2   FVSERFTKMAKRTKKVGITGKYVTRYGASL 91
           FVS    K+    K V +TG+ V  Y ASL
Sbjct: 94  FVSAVVDKLGYEVKMVKLTGRIVNTYYASL 123


>At5g66050.1 68418.m08319 expressed protein 
          Length = 340

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 2   FVSERFTKMAKRTKKVGITGKYVTRYGASL 91
           FVS    K+    K V +TG+ V  Y ASL
Sbjct: 188 FVSAVVDKLGYEVKMVKLTGRIVNTYYASL 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,508,193
Number of Sequences: 28952
Number of extensions: 115179
Number of successful extensions: 245
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)