Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1206
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   120   4e-28
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   6.3  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   8.3  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   8.3  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   8.3  
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  120 bits (290), Expect = 4e-28
 Identities = 52/65 (80%), Positives = 59/65 (90%)
 Frame = +1

Query: 253 NSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRR 432
           +SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWHR VN+ Q+R
Sbjct: 61  HSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKR 120

Query: 433 AALAA 447
            A+++
Sbjct: 121 YAVSS 125



 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 29/59 (49%), Positives = 39/59 (66%)
 Frame = +2

Query: 77  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 253
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQ 60


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 125 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 24
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -2

Query: 331  RTYGYHHHGHAEFGQQHVRYPMIRHCLVTSLLAHAVGLPRVLGHRNVNIIDQVRTYGRLE 152
            R  GY+      +     RYP +R    + L + A  LPR++  R+ + +   R + R  
Sbjct: 1376 RPEGYYEPPVQTYSPVPPRYPTLRRVDDSPLRSRAKSLPRIISPRHEHFVR--RPHSRNS 1433

Query: 151  YERE 140
            Y  E
Sbjct: 1434 YSNE 1437


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 364 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 281
           HHD  +++H  + +  HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 365 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 267
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 365 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 267
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +2

Query: 62  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 235
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 168 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 55
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 168 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 55
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 295 IPRVRGGGTHRSGQGAFGNMCRGG 366
           +P   GGG   S Q A GN C GG
Sbjct: 26  LPGAGGGGCCSSAQPACGNPCGGG 49


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 177 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 64
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 177 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 64
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,120,145
Number of Sequences: 27780
Number of extensions: 219972
Number of successful extensions: 718
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)