Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1206
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 120 3e-28
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 120 3e-28
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 0.36
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 30 0.83
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 30 0.83
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.1
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 2.5
At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger) fa... 28 3.4
At1g76010.1 68414.m08825 expressed protein 27 4.4
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 5.9
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 5.9
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 27 5.9
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain... 27 5.9
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 27 7.7
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 27 7.7
At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P... 27 7.7
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 27 7.7
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 27 7.7
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 27 7.7
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 120 bits (290), Expect = 3e-28
Identities = 51/64 (79%), Positives = 57/64 (89%)
Frame = +1
Query: 256 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRA 435
SAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWHRRVN+ +R
Sbjct: 69 SAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRH 128
Query: 436 ALAA 447
A+ +
Sbjct: 129 AIVS 132
Score = 69.7 bits (163), Expect = 8e-13
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = +2
Query: 71 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 244
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 245 GHQT 256
GHQT
Sbjct: 65 GHQT 68
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 120 bits (290), Expect = 3e-28
Identities = 51/64 (79%), Positives = 57/64 (89%)
Frame = +1
Query: 256 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRA 435
SAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWHRRVN+ +R
Sbjct: 68 SAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRH 127
Query: 436 ALAA 447
A+ +
Sbjct: 128 AIVS 131
Score = 71.7 bits (168), Expect = 2e-13
Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Frame = +2
Query: 62 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 235
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 236 KEAGHQT 256
K+AGHQT
Sbjct: 61 KKAGHQT 67
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 31.1 bits (67), Expect = 0.36
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 364 HHDTCYRRHPDRTYGYHHHGHAEF 293
HH Y H YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 29.9 bits (64), Expect = 0.83
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 211 LEAALLREQGGWSPNSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 381
+ AL+R + G P +AE + + + ++P G G G+ G FGN GG F
Sbjct: 76 MAVALIRRRMGAKP-TAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134
Query: 382 TKPW 393
W
Sbjct: 135 ISKW 138
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 29.9 bits (64), Expect = 0.83
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 389 GFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALFGDQP 240
GFV + P H +P L PPP++ + + P P S+ F +P
Sbjct: 174 GFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEP 223
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 86 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 232
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 137 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 232
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 137 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 232
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 346 RRHPDRTYGYHHHGHAEFGQQHVRYPMIRHCLV 248
R P +G+H ++ QQH+ P RHCLV
Sbjct: 150 RMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLV 182
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 235 QGGWSPNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 363
QG + + G GR R R RGGG R G G F N G
Sbjct: 303 QGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 61 NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 198
N +I +PT S+ G S V + GAHT G + C+ F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 271 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 366
G GR R +GGG + G G+ G+ CR G
Sbjct: 88 GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -1
Query: 377 ANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALFGDQPP 237
A+ RPP LP+ P + PPP + P P + PP
Sbjct: 2 ASYRPPYPPLPQPPSQNSLAPPPPPPSLPPPVPPPPPSHQPYSYPPP 48
>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to CLATHRIN
COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
SWISSPROT:Q61548
Length = 599
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 125 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 27
PAPS ++ N + +P+D F E PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 250 PNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 366
P S+ G R+P+ GGG G+G G RGG
Sbjct: 420 PKSSNPRNGGEGYQRVPQNGGGGRGGRGEGGRGG-ARGG 457
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 250 PNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 366
P S+ G R+P+ GGG G+G G RGG
Sbjct: 419 PKSSNPRNGGEGYQRVPQNGGGGRGGRGEGGRGG-ARGG 456
>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
(PTPA) family protein similar to Protein phosphatase 2A,
regulatory subunit B' (PP2A, subunit B', PR53 isoform)
(Phosphotyrosyl phosphatase activator) (PTPA)
(Swiss-Prot:Q28717) [Oryctolagus cuniculus]
Length = 392
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 347 PKAP*PDLWVPPPRTRGIRATARPVPHDS 261
P A P++ PPP R IRA A +PH+S
Sbjct: 46 PLASFPEM-SPPPNYRPIRAPAINLPHNS 73
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 140 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPPKY 27
G W+H SH+ ++ L VG+ + Y+S + P +Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 235 QGGWSPNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 369
+G S + G GR R +GGG H+ G+G +GGR
Sbjct: 15 EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 235 QGGWSPNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 369
+G S + G GR R +GGG H+ G+G +GGR
Sbjct: 15 EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,770,456
Number of Sequences: 28952
Number of extensions: 217073
Number of successful extensions: 801
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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