Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1205
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   109   2e-25
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   109   2e-25
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   0.79 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   1.8  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   1.8  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   3.2  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   4.2  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   4.2  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    25   7.3  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.3  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   7.3  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   9.7  
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    25   9.7  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  109 bits (263), Expect = 2e-25
 Identities = 46/52 (88%), Positives = 48/52 (92%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 409
           QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 61  QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 52/152 (34%), Positives = 67/152 (44%)
 Frame = +3

Query: 72  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 251
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 252 HKPVPNHGVPDVLLPEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPGGAGTVASTSDS 431
           H+           L                                       V    + 
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 432 GERPWQQPVAATGVPALVQARGHIIERFPSFP 527
                   VAA+GVP+L+ ARGH IE  P  P
Sbjct: 120 KRYAIASAVAASGVPSLLLARGHRIEEIPEVP 151


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  109 bits (263), Expect = 2e-25
 Identities = 46/52 (88%), Positives = 48/52 (92%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 409
           QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 61  QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 85.0 bits (201), Expect = 6e-18
 Identities = 53/152 (34%), Positives = 67/152 (44%)
 Frame = +3

Query: 72  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 251
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 252 HKPVPNHGVPDVLLPEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPGGAGTVASTSDS 431
           H+           L                                       V    + 
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 432 GERPWQQPVAATGVPALVQARGHIIERFPSFP 527
                   VAA+GVP+L+ ARGH IE  P  P
Sbjct: 120 KRYAISSAVAASGVPSLLLARGHRIEEIPEVP 151


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 402 AGTVASTSDSGERPWQQPVAATGVPAL 482
           A   +S + S   PWQQP A    PAL
Sbjct: 427 AKPASSAAPSNPAPWQQPAAPQSAPAL 453


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = +3

Query: 75  SVARPLVSVYSEKS-ETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS---K 242
           SVA P     S  +  T   +A PL     + ++P   ND + S S +S  P   S    
Sbjct: 381 SVASPAFPNSSTSNPSTAPASASPLA----STLKPSTANDTNGSSSSSSSNPRTSSPLAS 436

Query: 243 EAGHKPVPNHGVPDVLLP 296
            A +KP      P VLLP
Sbjct: 437 NAENKPPVAQQSPPVLLP 454


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = +3

Query: 399 GAGTVASTSDSGERPWQQPVAATGV----PALVQARGHIIERFPSFPW 530
           G G  A  S    R WQ  +   G+     +L    G  IER P+ PW
Sbjct: 63  GPGHPAEYSSILNRIWQLNIPVMGICLGFQSLALYHGATIERMPNLPW 110


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 133 APCTVSLFSEYTDTKGRATDRLISLL 56
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 71  SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 181
           SI SP+ SVG   +  D +  S + P+ I G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 146 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 241
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 475 GTPVAATGCCQGR 437
           GTP   TGCC+ R
Sbjct: 161 GTPSTGTGCCESR 173


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 469 PVAATGCCQGRSPLSEVDATVPAPP 395
           PV +T   Q  SP+  V   VPAPP
Sbjct: 395 PVQSTQYYQPSSPVQPVQNGVPAPP 419


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -1

Query: 311 GHAEFGQQHVR--YPMIRHWFV 252
           G++ F  +HV   +P ++HWFV
Sbjct: 320 GNSTFPTRHVLSYFPQVKHWFV 341


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +3

Query: 123 VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHK 257
           +QG+  P  F  +    P+ +   H   ++    PY   K+  HK
Sbjct: 709 LQGSDGPRKFTIEKAGEPNKLPKAHTCFNRLDLPPYTSKKDLDHK 753


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 482 ERWDASSSNGLLPRPL 435
           ERWD    NG  P P+
Sbjct: 68  ERWDEQRENGTFPAPI 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,409
Number of Sequences: 5004
Number of extensions: 40584
Number of successful extensions: 142
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)