Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1205
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 111 3e-25
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 111 3e-25
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 0.51
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.5
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 29 2.7
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 3.6
At3g22380.1 68416.m02825 expressed protein 28 3.6
At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P... 28 4.7
At1g76010.1 68414.m08825 expressed protein 27 6.2
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 27 6.2
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 27 6.2
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 8.3
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 8.3
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain... 27 8.3
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 111 bits (267), Expect = 3e-25
Identities = 47/52 (90%), Positives = 49/52 (94%)
Frame = +2
Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 409
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 67 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118
Score = 66.1 bits (154), Expect = 1e-11
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +3
Query: 75 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 248
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 249 GHK 257
GH+
Sbjct: 65 GHQ 67
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +3
Query: 456 VAATGVPALVQARGHIIERFPSFPWL*PDKS 548
+AAT VPALV ARGH IE P P + D +
Sbjct: 134 IAATAVPALVMARGHKIENVPEMPLVVSDSA 164
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 111 bits (267), Expect = 3e-25
Identities = 47/52 (90%), Positives = 49/52 (94%)
Frame = +2
Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 409
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 66 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117
Score = 68.1 bits (159), Expect = 4e-12
Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = +3
Query: 66 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 239
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 240 KEAGHK 257
K+AGH+
Sbjct: 61 KKAGHQ 66
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +3
Query: 456 VAATGVPALVQARGHIIERFPSFPWL*PDKS 548
+AAT VPALV ARGH IE P P + D +
Sbjct: 133 IAATAVPALVMARGHKIENVPEMPLVVSDSA 163
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 31.1 bits (67), Expect = 0.51
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 368 HHDTCYRRHPDRTYGYHHHGHAEF 297
HH Y H YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 90 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 236
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 215 LEAALLREQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 385
+ AL+R + G ++ +AE + + + ++P G G G+ G FGN GG F
Sbjct: 76 MAVALIRRRMG-AKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134
Query: 386 TKPW 397
W
Sbjct: 135 ISKW 138
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 141 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 236
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 141 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 236
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 390 SPGGAGTVASTSDSGERPWQQPVAATGVPALVQARGH 500
+PGG G V S+S GE+ QQ V+ GV + Q+ G+
Sbjct: 997 APGG-GVVGSSSSHGEKKSQQQVSKAGVESF-QSPGY 1031
>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
(PTPA) family protein similar to Protein phosphatase 2A,
regulatory subunit B' (PP2A, subunit B', PR53 isoform)
(Phosphotyrosyl phosphatase activator) (PTPA)
(Swiss-Prot:Q28717) [Oryctolagus cuniculus]
Length = 392
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 351 PKAP*PDLWVPPPRTRGIRATARPVPHDSALVCDQP 244
P A P++ PPP R IRA A +PH+S + P
Sbjct: 46 PLASFPEM-SPPPNYRPIRAPAINLPHNSQAIILSP 80
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +2
Query: 239 QGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 367
QG + G GR R R RGGG R G G F N G
Sbjct: 303 QGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +2
Query: 236 EQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 370
E GGW + + G GR R R RG G + + GG
Sbjct: 178 EDGGWEREQSYGRGRGRGRGRSSRGRGRGGYNGPPNEYDAPQDGG 222
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 239 QGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 373
+G S+ + G GR R +GGG H+ G+G +GGR
Sbjct: 15 EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 239 QGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 373
+G S+ + G GR R +GGG H+ G+G +GGR
Sbjct: 15 EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 65 NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 202
N +I +PT S+ G S V + GAHT G + C+ F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 275 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 370
G GR R +GGG + G G+ G+ CR G
Sbjct: 88 GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to CLATHRIN
COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
SWISSPROT:Q61548
Length = 599
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 129 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 31
PAPS ++ N + +P+D F E PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,780,539
Number of Sequences: 28952
Number of extensions: 254630
Number of successful extensions: 886
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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