Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1203
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    87   7e-19
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    54   6e-09
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    53   2e-08
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    50   1e-07
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    28   0.61 
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    27   1.1  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   1.9  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   2.5  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   2.5  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   3.3  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   4.3  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   5.7  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    24   7.6  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    24   10.0 
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    24   10.0 

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 87.4 bits (207), Expect = 7e-19
 Identities = 35/47 (74%), Positives = 44/47 (93%)
 Frame = +2

Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
           R+NVY+NEA+GGKYVPRAV+VDLEPGTMD+V+SG FG +FRPDN ++
Sbjct: 46  RLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIY 92



 Score = 74.5 bits (175), Expect = 5e-15
 Identities = 30/43 (69%), Positives = 35/43 (81%)
 Frame = +3

Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQ 251
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D+ G Y G S+ Q
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQ 43


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 54.4 bits (125), Expect = 6e-09
 Identities = 19/44 (43%), Positives = 31/44 (70%)
 Frame = +2

Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
           + +++E   GKYVPR++ VDLEP  +D VR+GP+  +F P+  +
Sbjct: 50  STFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLI 93



 Score = 40.7 bits (91), Expect = 8e-05
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +3

Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 224
           MREI+ I  GQ G QIG   WE+   EHGI   G
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 52.8 bits (121), Expect = 2e-08
 Identities = 19/42 (45%), Positives = 30/42 (71%)
 Frame = +2

Query: 269 YYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
           +++E   GK+VPR++ VDLEP  +D VR+GP+  +F P+  V
Sbjct: 56  FFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMV 97



 Score = 41.1 bits (92), Expect = 6e-05
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +3

Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNAS 263
           MRE++ +  GQ G QIG   WE+   EHGI   G  + +S++  N S
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNS 47


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +3

Query: 126 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 224
           REI+ +QAGQCGNQIG++FW+ +  EHGI   G
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDG 35



 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 14/46 (30%), Positives = 33/46 (71%)
 Frame = +2

Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
           R +V++ ++   +Y+PRA+++DLEP  ++++ S  +G ++ P+N +
Sbjct: 47  RKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENIL 92


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 287 LKLRYSRH*CVKLQVGVAAVSTRGVNAVLVRDYFPELCSDLIPALTRLDVDDFPHDCT 114
           ++L  SR  C +   G+  +    V  +   +Y P   S+ +  + RLDVD F H  T
Sbjct: 599 VRLGISRKRCERYPFGILCIIFT-VLEIAAEEYSPNWESEELRLVNRLDVDSFLHPKT 655


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 399 PKTKLSGRKICPNGPERTESMVPGSRS 319
           PK  L  R I PNGPE  +  + GS S
Sbjct: 25  PKEVLHTRVIVPNGPEEIKLRLVGSHS 51


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 191 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 87
           +F E+   + P   +LD+DD  +     + P E+N
Sbjct: 36  FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 88  FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 246
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 88  FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 246
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 148 AWMWTISLMIALKIWNPPNRI 86
           AW+W ++LM+    +  PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 102 FQIFSAIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMS 269
           F + S I      I    C  +    +W+V+    G+  TGA S  SD  L  S+S
Sbjct: 807 FSVLSLICPSRTLIIDKACVEKTWPYWWDVLHQSFGVKLTGATSVASD-PLKGSIS 861


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 189 VISDEHGIDATGAYSGDSDLQLNASMSTITK 281
           ++  +HG+D  G + GDS  ++N+ +   +K
Sbjct: 281 IVMGDHGMDNKGNHGGDSFDEINSVLWMYSK 311


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 163 FPH*PAWMWTISLMIALKIWNPPNR 89
           FP     MWTI L++ L +W+  ++
Sbjct: 25  FPLVSFLMWTIGLIVLLGLWSTQDK 49


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -3

Query: 127 LMIALKIWNPPN--RILNKHFREFDHVKK 47
           L I    W PP       KH REF+ +KK
Sbjct: 132 LSIGRPSWLPPKSKEEEKKHMREFEQIKK 160


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 189 VISDEHGIDATGAYSGDSDLQLNA 260
           V SDE    A+G YSGD +L   A
Sbjct: 234 VYSDEKFFYASGRYSGDVELLCKA 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,768
Number of Sequences: 5004
Number of extensions: 34265
Number of successful extensions: 91
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)