BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1203
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 101 3e-22
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 99 6e-22
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 100 8e-22
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 93 7e-20
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 93 7e-20
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 93 7e-20
03_01_0034 + 318432-318825,318902-319851 92 1e-19
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 91 3e-19
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 58 3e-09
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 55 2e-08
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 55 2e-08
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 54 3e-08
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 48 2e-06
06_01_0460 + 3276855-3277967 32 0.19
11_06_0703 + 26444128-26446215,26446525-26447226 28 2.4
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 27 4.1
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 27 5.5
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 27 5.5
03_02_0319 - 7421357-7421757,7421768-7421843,7424695-7424796,742... 27 5.5
10_08_0782 + 20517103-20519601 27 7.2
03_05_0534 + 25343973-25344267,25344510-25344979 27 7.2
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042 27 7.2
06_01_0158 - 1186903-1187013,1187108-1187197,1187504-1187590,118... 26 9.5
05_05_0016 - 21542300-21542886,21542956-21543286,21543310-215434... 26 9.5
05_01_0170 + 1180168-1180367,1181538-1181598,1181657-1181659,118... 26 9.5
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 101 bits (241), Expect = 3e-22
Identities = 44/47 (93%), Positives = 47/47 (100%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
RINVYYNEASGG+YVPRAV++DLEPGTMDSVRSGPFGQIFRPDNFVF
Sbjct: 46 RINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVF 92
Score = 89.8 bits (213), Expect = 7e-19
Identities = 38/44 (86%), Positives = 41/44 (93%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIGAKFWEVI DEHG+DATG Y+GDSDLQL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYAGDSDLQL 44
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 99 bits (238), Expect = 6e-22
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
RINVYYNEASGG+YVPRAV++DLEPGTMDSVRSGP+GQIFRPDNFVF
Sbjct: 46 RINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVF 92
Score = 89.0 bits (211), Expect = 1e-18
Identities = 39/44 (88%), Positives = 40/44 (90%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG YSGDSDLQL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL 44
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 99.5 bits (237), Expect = 8e-22
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
RINVYYNEASGG++VPRAV++DLEPGTMDSVRSGPFGQIFRPDNFVF
Sbjct: 46 RINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVF 92
Score = 89.0 bits (211), Expect = 1e-18
Identities = 39/44 (88%), Positives = 40/44 (90%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG YSGDSDLQL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL 44
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 93.1 bits (221), Expect = 7e-20
Identities = 39/47 (82%), Positives = 46/47 (97%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
R+NVYYNEAS G++VPRAV++DLEPGTMDSVR+GP+GQIFRPDNFVF
Sbjct: 226 RVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVF 272
Score = 83.8 bits (198), Expect = 4e-17
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIG+KFWEV+ DEHGID TG Y+G SDLQL
Sbjct: 181 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQL 224
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 93.1 bits (221), Expect = 7e-20
Identities = 39/47 (82%), Positives = 46/47 (97%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
R+NVYYNEAS G++VPRAV++DLEPGTMDSVR+GP+GQIFRPDNFVF
Sbjct: 46 RVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVF 92
Score = 85.8 bits (203), Expect = 1e-17
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIGAKFWEV+ DEHGID TG Y+G+SDLQL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQL 44
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 93.1 bits (221), Expect = 7e-20
Identities = 39/47 (82%), Positives = 46/47 (97%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
R+NVYYNEAS G++VPRAV++DLEPGTMDSVR+GP+GQIFRPDNFVF
Sbjct: 46 RVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVF 92
Score = 82.6 bits (195), Expect = 1e-16
Identities = 35/44 (79%), Positives = 38/44 (86%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIG+KFWEV+ DEHGID TG Y G SDLQL
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL 44
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 92.3 bits (219), Expect = 1e-19
Identities = 39/47 (82%), Positives = 45/47 (95%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
R+NVYYNEAS G++VPRAV++DLEPGTMDSVRSGP+G IFRPDNFVF
Sbjct: 46 RVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVF 92
Score = 86.2 bits (204), Expect = 8e-18
Identities = 37/44 (84%), Positives = 39/44 (88%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIGAKFWEV+ EHGIDATG Y GDSDLQL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQL 44
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 91.1 bits (216), Expect = 3e-19
Identities = 39/47 (82%), Positives = 45/47 (95%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
RINVY+NEASGG++VPRAV++DLEPGTMDS+RSGP G IFRPDNFVF
Sbjct: 46 RINVYFNEASGGRHVPRAVLMDLEPGTMDSLRSGPIGGIFRPDNFVF 92
Score = 77.4 bits (182), Expect = 4e-15
Identities = 33/44 (75%), Positives = 36/44 (81%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIGAKFWEVI EHG+D TG Y+G S QL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDPTGTYTGTSPQQL 44
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 57.6 bits (133), Expect = 3e-09
Identities = 21/44 (47%), Positives = 33/44 (75%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
N +++E S GK+VPRA+ VDLEP +D V++GP+ Q+F P+ +
Sbjct: 110 NTFFSETSSGKHVPRALFVDLEPTVIDEVKTGPYRQLFHPEQLI 153
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS 242
MREI+ I GQ G Q+G WE+ EHGI G D+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGLMPRDA 40
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 55.2 bits (127), Expect = 2e-08
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ +
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLI 93
Score = 39.9 bits (89), Expect = 7e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 239
MRE + I GQ G Q+G WE+ EHGI G GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 54.8 bits (126), Expect = 2e-08
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
N +++E GK+VPRA+ VDLEP +D VR+G + Q+F P+ +
Sbjct: 50 NTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLI 93
Score = 41.1 bits (92), Expect = 3e-04
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS 242
MREI+ I GQ G Q+G WE+ EHGI+ G D+
Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDT 40
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 54.4 bits (125), Expect = 3e-08
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ +
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGCYRQLFHPEQLI 93
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 239
MRE + I GQ G Q+G WE+ EHGI A G D
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPSD 39
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 48.4 bits (110), Expect = 2e-06
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +3
Query: 126 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 224
REI+ IQ GQCGNQIG +FW+ + EHGI G
Sbjct: 3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDG 35
Score = 37.9 bits (84), Expect = 0.003
Identities = 13/44 (29%), Positives = 29/44 (65%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDN 388
R +V++ +A Y+PRA++VDLEP ++ +++ + ++ +N
Sbjct: 47 RKDVFFYQADDQHYIPRALLVDLEPRVINGIQNSEYRNLYNHEN 90
>06_01_0460 + 3276855-3277967
Length = 370
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 136 STSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPTCSLTHQCLL*RSFRGQVRPASCD 315
+T R+ +RS + G +R +PR A TC++ H LL R + P D
Sbjct: 271 ATCRKARRTVRSLKGWGAIARLRDEESPRAAVACIGTCAMLHNVLLAREDHSALAPEETD 330
Query: 316 GGP 324
P
Sbjct: 331 LPP 333
>11_06_0703 + 26444128-26446215,26446525-26447226
Length = 929
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = -2
Query: 248 QVGVAAVSTRGVNAVLVRDY----FPELCSDLIPALTRLDVDDFP 126
++ +AA++ G + V + FP LC ++P+L RLD+D+ P
Sbjct: 776 EISLAAMNEGGEDGTTVTEKGEASFPRLC--VLPSLKRLDIDNCP 818
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +3
Query: 222 GAYSGDSDL--QLNASMSTITKLQGASTS 302
GA +GD DL +L A+ TIT+LQGA S
Sbjct: 780 GAAAGDGDLAARLAAAEHTITELQGALDS 808
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFW 185
MRE V +Q G N +G+ FW
Sbjct: 1 MREAVTVQVGGFANYVGSHFW 21
>04_04_1218 -
31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 198 DEHGIDATGAYSGDSDLQLNASMSTITKLQGASTSREL*WWTLSLEPWTPS 350
DEH I Y D D Q + ++ +++ A RE + +E W S
Sbjct: 11 DEHEIVQEDLYLDDDDEQFDVDLNEDNEMEEAEPKREQNLVKVGMEAWNQS 61
>03_02_0319 -
7421357-7421757,7421768-7421843,7424695-7424796,
7424911-7424982
Length = 216
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFW 185
MRE V +Q G N +G+ FW
Sbjct: 1 MREAVTVQVGGFANYVGSHFW 21
>10_08_0782 + 20517103-20519601
Length = 832
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 397 EDEVVRSEDLPKRPGTD-GVHGSRLKVHHHSSRDVLAP*SFVIVDIDAL 254
+DE+ LP+ D GV + VH+H+ RDVL + I+A+
Sbjct: 348 DDELSGDVGLPEYEVVDKGVETVKEVVHYHAHRDVLKELDSIAEQIEAI 396
>03_05_0534 + 25343973-25344267,25344510-25344979
Length = 254
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 397 EDEVVRSEDLPKRPGTDGVHG 335
+DE E +RP DGVHG
Sbjct: 20 DDEAAEEEQERRRPARDGVHG 40
>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
Length = 819
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 153 QCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNAS 263
QC ++G K E++ + IDA+ S D+ ++ S
Sbjct: 653 QCSVELGKKIEEILQKQTSIDASAPQSDIEDVTISLS 689
>06_01_0158 -
1186903-1187013,1187108-1187197,1187504-1187590,
1187668-1187839,1187917-1188647,1188789-1188861,
1189295-1189380,1189455-1189529,1189610-1189643,
1190331-1190622,1191073-1191439
Length = 705
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 275 NEASGGKYVPRAVMVDLEPGTMDSVRSGPFG 367
+ + GG PR + D PG +RS P G
Sbjct: 74 DRSPGGSSQPRRSLADRSPGNRSELRSTPAG 104
>05_05_0016 -
21542300-21542886,21542956-21543286,21543310-21543419,
21543526-21544069,21544190-21544345
Length = 575
Score = 26.2 bits (55), Expect = 9.5
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Frame = -2
Query: 344 SPWFQAQGPPSQLAGRTCPLKL-----RYSRH*CVKLQVGVAAVSTRG---VNAVLVRDY 189
S WF Q P LA + CP + V L A+ +R V+ VRD
Sbjct: 135 SKWFYHQIPADLLANKECPFTFSCKTAKVVAEPSVALTADFLAIRSRVEELVSKFSVRDL 194
Query: 188 FPE-LCSDLIP--ALTRLDVDDFPHDCTKNLEPPESNI 84
F E +C + P A + + P + T L P E ++
Sbjct: 195 FEEFVCLGIQPLTAGWNISLGQVPSEATSTLPPFEVDL 232
>05_01_0170 +
1180168-1180367,1181538-1181598,1181657-1181659,
1182396-1182443,1182979-1184595
Length = 642
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 10 LL*ENHCIFILIFFLHDQILESVYLIFDSGGSKFLVQS*GKSS 138
LL + CI L+FFLH S+++ F+ SK + GK S
Sbjct: 39 LLASSFCIASLLFFLHSLFHVSLFIWFEE--SKVSSEGFGKGS 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,518,835
Number of Sequences: 37544
Number of extensions: 262051
Number of successful extensions: 717
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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