Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1203
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 100 3e-22
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 100 7e-22
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 100 7e-22
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 97 3e-21
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 96 9e-21
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 94 3e-20
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 94 3e-20
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 91 2e-19
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 91 2e-19
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 55 2e-08
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 55 2e-08
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 55 2e-08
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 55 2e-08
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 55 2e-08
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 55 2e-08
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 54 4e-08
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 48 2e-06
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 48 2e-06
At4g37190.1 68417.m05265 expressed protein 30 0.49
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 29 0.86
At2g26850.1 68415.m03221 F-box family protein contains Pfam PF00... 29 0.86
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 6.1
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 100 bits (240), Expect = 3e-22
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
RINVYYNEASGG+YVPRAV++DLEPGTMDS+RSGPFGQIFRPDNFVF
Sbjct: 47 RINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVF 93
Score = 83.4 bits (197), Expect = 5e-17
Identities = 37/45 (82%), Positives = 41/45 (91%), Gaps = 1/45 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD-SDLQL 254
MREI+HIQ GQCGNQIG+KFWEVI DEHGID+TG YSGD +DLQL
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQL 45
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 99.5 bits (237), Expect = 7e-22
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
RINVY+NEASGGKYVPRAV++DLEPGTMDS+RSGPFGQIFRPDNFVF
Sbjct: 46 RINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVF 92
Score = 79.8 bits (188), Expect = 6e-16
Identities = 35/44 (79%), Positives = 37/44 (84%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIGAKFWEVI EHGID TG GD+DLQL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQL 44
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 99.5 bits (237), Expect = 7e-22
Identities = 42/47 (89%), Positives = 47/47 (100%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
RINVYYNEASGG+YVPRAV++DLEPGTMDS+RSGP+GQIFRPDNFVF
Sbjct: 47 RINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVF 93
Score = 81.8 bits (193), Expect = 2e-16
Identities = 35/45 (77%), Positives = 40/45 (88%), Gaps = 1/45 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS-DLQL 254
MREI+H+Q GQCGNQIG+KFWEVI DEHG+D TG Y+GDS DLQL
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQL 45
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 97.5 bits (232), Expect = 3e-21
Identities = 42/47 (89%), Positives = 47/47 (100%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
RI+VY+NEASGGKYVPRAV++DLEPGTMDS+RSGPFGQIFRPDNFVF
Sbjct: 46 RIDVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVF 92
Score = 83.8 bits (198), Expect = 4e-17
Identities = 37/44 (84%), Positives = 38/44 (86%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDS LQL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQL 44
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 95.9 bits (228), Expect = 9e-21
Identities = 41/47 (87%), Positives = 46/47 (97%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
R+NVYYNEAS G+YVPRAV++DLEPGTMDSVRSGP+GQIFRPDNFVF
Sbjct: 46 RVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVF 92
Score = 80.6 bits (190), Expect = 4e-16
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIG+KFWEV++ EHGID TG Y GDS+LQL
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQL 44
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 94.3 bits (224), Expect = 3e-20
Identities = 40/47 (85%), Positives = 46/47 (97%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
R+NVYYNEAS G++VPRAV++DLEPGTMDSVRSGP+GQIFRPDNFVF
Sbjct: 46 RVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVF 92
Score = 82.2 bits (194), Expect = 1e-16
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIGAKFWEV+ EHGID+TG Y G++DLQL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQL 44
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 94.3 bits (224), Expect = 3e-20
Identities = 39/47 (82%), Positives = 46/47 (97%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
R+NVYYNEAS G+YVPRA+++DLEPGTMDSVR+GP+GQIFRPDNFVF
Sbjct: 46 RVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVF 92
Score = 83.4 bits (197), Expect = 5e-17
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIG+KFWEV+ DEHGID TG Y G+SDLQL
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQL 44
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 91.5 bits (217), Expect = 2e-19
Identities = 39/47 (82%), Positives = 45/47 (95%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
RINVYYNEAS G++VPRAV++DLEPGTMDS+RSGP+GQ FRPDNFVF
Sbjct: 46 RINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVF 92
Score = 84.6 bits (200), Expect = 2e-17
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIGAKFWEV+ EHGID TG Y+GDSDLQL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL 44
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 91.5 bits (217), Expect = 2e-19
Identities = 39/47 (82%), Positives = 45/47 (95%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVF 397
RINVYYNEAS G++VPRAV++DLEPGTMDS+RSGP+GQ FRPDNFVF
Sbjct: 46 RINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVF 92
Score = 84.6 bits (200), Expect = 2e-17
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL 254
MREI+HIQ GQCGNQIGAKFWEV+ EHGID TG Y+GDSDLQL
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL 44
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 55.2 bits (127), Expect = 2e-08
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ +
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS 242
MREI+ I GQ G Q+G WE+ EHGI G D+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDT 40
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 55.2 bits (127), Expect = 2e-08
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ +
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS 242
MREI+ I GQ G Q+G WE+ EHGI G D+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDT 40
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 55.2 bits (127), Expect = 2e-08
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ +
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Score = 39.9 bits (89), Expect = 6e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 239
MRE + I GQ G Q+G WE+ EHGI G GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 55.2 bits (127), Expect = 2e-08
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ +
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Score = 39.9 bits (89), Expect = 6e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 239
MRE + I GQ G Q+G WE+ EHGI G GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 55.2 bits (127), Expect = 2e-08
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ +
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Score = 37.5 bits (83), Expect = 0.003
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 239
MRE + I GQ G Q+G WE+ EHGI G D
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSD 39
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 55.2 bits (127), Expect = 2e-08
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ +
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Score = 37.5 bits (83), Expect = 0.003
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 239
MRE + I GQ G Q+G WE+ EHGI G D
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSD 39
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 54.0 bits (124), Expect = 4e-08
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFV 394
N +++E S G++VPRAV +DLEP +D VR+G + Q+F P+ +
Sbjct: 50 NTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLI 93
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS 242
MREI+ I GQ G Q+G WE+ EHGI G DS
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDS 40
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 48.0 bits (109), Expect = 2e-06
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +3
Query: 126 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 224
REI+ +Q GQCGNQIG +FW+ + EHGI G
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG 35
Score = 39.9 bits (89), Expect = 6e-04
Identities = 13/44 (29%), Positives = 30/44 (68%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDN 388
R +V++ +A Y+PRA+++DLEP ++ +++G + ++ +N
Sbjct: 47 RKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHEN 90
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 48.0 bits (109), Expect = 2e-06
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +3
Query: 126 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 224
REI+ +Q GQCGNQIG +FW+ + EHGI G
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG 35
Score = 39.9 bits (89), Expect = 6e-04
Identities = 13/44 (29%), Positives = 30/44 (68%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDN 388
R +V++ +A Y+PRA+++DLEP ++ +++G + ++ +N
Sbjct: 47 RKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHEN 90
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.3 bits (65), Expect = 0.49
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFW 185
MREIV IQ G+ N +G+ FW
Sbjct: 1 MREIVTIQVGEFANFVGSHFW 21
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 29.5 bits (63), Expect = 0.86
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 129 EIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMSTI 275
+I++ A + G+ GA FWEVIS + ++G S + L+ ST+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVIS-----EGMSNFAGPSSIILSDKSSTV 389
>At2g26850.1 68415.m03221 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 371
Score = 29.5 bits (63), Expect = 0.86
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 185 PELCSDLIPALTRLDVDDFPHDCTKNLEPP 96
P+L S ++ ++ LD+ D P DC L PP
Sbjct: 50 PDLASPVLGKMSILDLPDLPLDCILELLPP 79
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 144 QAGQCGNQIGAKFWEVISDEHGIDATGAYSG 236
QA G IG ++W +IS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,617,804
Number of Sequences: 28952
Number of extensions: 195704
Number of successful extensions: 492
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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