Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1202
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 145 3e-36
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 87 1e-18
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 86 2e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 58 7e-10
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 28 0.68
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 28 0.68
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 1.6
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom... 26 2.7
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 8.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 8.4
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom... 25 8.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.4
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 25 8.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 145 bits (352), Expect = 3e-36
Identities = 66/105 (62%), Positives = 83/105 (79%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
+G+TT RFPG+LN+DLRKLAVNMVPFPRLHF+ GFAPL + G+ ++A++VPELT QM
Sbjct: 234 AGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQM 293
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTA 316
FDA NMMVA DPRHGRYLTVA +FRG+ K++ R +TK +
Sbjct: 294 FDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNS 338
Score = 82.6 bits (195), Expect = 3e-17
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMAXXXXXXXXXXXXX 432
+G++SMKEVDEQ+ ++Q KNS YFVEWIP+N AVC +PP+ LKM+
Sbjct: 318 RGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEI 377
Query: 433 XKRVSEQFVAMFRXES 480
+R+ +QF AMFR ++
Sbjct: 378 FRRLGDQFSAMFRRKA 393
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 87.0 bits (206), Expect = 1e-18
Identities = 38/89 (42%), Positives = 54/89 (60%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S IT LRF G LN DL + N+VP+PR+HF +AP+ S + + +V E+T Q
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQC 295
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL 268
F+ N MV CDPR GRY+ ++RG+ +
Sbjct: 296 FEPYNQMVKCDPRAGRYMATCLLYRGDVI 324
Score = 37.5 bits (83), Expect = 0.001
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLK 387
+G + ++V + I+ K + FV+W P KI +CD PP+ ++
Sbjct: 320 RGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIE 364
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 86.2 bits (204), Expect = 2e-18
Identities = 37/89 (41%), Positives = 54/89 (60%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S IT LRF G LN DL + N+VP+PR+HF ++P+ S + + +V E+T Q
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQC 299
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL 268
F+ N MV CDPR GRY+ ++RG+ +
Sbjct: 300 FEPYNQMVKCDPRTGRYMATCLLYRGDVI 328
Score = 33.9 bits (74), Expect = 0.014
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR 378
+G + ++V + +I+++ + FV+W P KI +C PP+
Sbjct: 324 RGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQ 365
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.0 bits (134), Expect = 7e-10
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRAL---TVPELT 172
S TT LR+PG +N DL + +++P PR HF + P T++ ++ +A+ TV ++
Sbjct: 237 SASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVM 296
Query: 173 LQMFDAKNMMVACDP-RHGRYLTVATIFRGE 262
++ KN MV+ +P + ++++ I +GE
Sbjct: 297 RRLLLPKNQMVSVNPSKKSCFISILDIIQGE 327
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 244 DDIQGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP 375
D IQG +V + L I+ + F+ W P + ++A+ P
Sbjct: 322 DIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSP 365
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 0.68
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 145 SSFNCTRADAANVRRQKHDGRV*SSTREVFDRCDDIQGRMSMKEVDEQLANIQNK 309
S+ N R D + + + STR DR D G S++E+D+Q +N+
Sbjct: 253 SANNSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDKQRKEFENR 307
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 28.3 bits (60), Expect = 0.68
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 296 FASCSSTSFIDIRP*ISSQRSNTSRVEDHTRPSCFWRRTFAASARVQL 153
F+ C T I P + N + + D ++ FW++ F ASA V L
Sbjct: 25 FSKCHRTVTTKILPIVEKYAKNCNTIWDSSK---FWKQFFEASANVSL 69
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 290 WRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLXPSLVTRRXYRPYSRGCL---SSSW 460
+R+ K+ ++++ GYP R+P V L+ +L+ LV + PY+ + S +W
Sbjct: 208 FRLRSQKSDKVMNKGYPFGYRIPSVGQLQLILRQTN-GLVIKVFLVPYNVSSMVDCSKTW 266
Query: 461 L 463
+
Sbjct: 267 I 267
>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 236
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 239 VATIFRGECL*KKLTSNWRIFRTKTARILSSG 334
+ + +R ECL +L ++ + RT+ A I S+G
Sbjct: 117 LTSTYRSECLLYELLDSFGVSRTRVAAIASTG 148
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 62 AVNMVPFPRLHFYTPGFAPL 121
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 62 AVNMVPFPRLHFYTPGFAPL 121
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 62 AVNMVPFPRLHFYTPGFAPL 121
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 62 AVNMVPFPRLHFYTPGFAPL 121
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 62 AVNMVPFPRLHFYTPGFAPL 121
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 297 IRQLLVNFFHRHSPLNIVATVKYLP 223
I LL+NF+HR+ PL + V P
Sbjct: 314 ISSLLLNFWHRNQPLVLPPKVGATP 338
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 62 AVNMVPFPRLHFYTPGFAPL 121
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 62 AVNMVPFPRLHFYTPGFAPL 121
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 62 AVNMVPFPRLHFYTPGFAPL 121
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -2
Query: 372 RYVTHGNLAVIGYPLDKIRAVFVLNIRQLLVNFFHRHSPLNIVATVKYL 226
R+++ +L V +K+ A + + L+VNF + H+PL A +K L
Sbjct: 420 RHISKRSLEVTKLSKEKLLA-YTKKLWSLIVNFEYTHAPLIPDAYMKLL 467
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 62 AVNMVPFPRLHFYTPGFAPL 121
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 62 AVNMVPFPRLHFYTPGFAPL 121
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 62 AVNMVPFPRLHFYTPGFAPL 121
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,211
Number of Sequences: 5004
Number of extensions: 37677
Number of successful extensions: 125
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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