Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1202
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.33 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.58 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.1  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   7.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 194 FWRRTFAASARVQLKLDTVELLATSAAQSQ 105
           FW +  AA ARV L + ++  L+T  A+SQ
Sbjct: 266 FWIKPEAAPARVTLGVTSLLTLSTQHAKSQ 295


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 194 FWRRTFAASARVQLKLDTVELLATSAAQSQ 105
           FW +  A  ARV L + ++  LAT   QSQ
Sbjct: 235 FWIKPEAIPARVTLGVTSLLTLATQNTQSQ 264


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 194 FWRRTFAASARVQLKLDTVELLAT 123
           FW    A SARV L + TV  + T
Sbjct: 263 FWINHEATSARVALGITTVLTMTT 286


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 240 TVKYLPCRGSHATIMFLASNICSVSSGT 157
           T KY+     +A  + LAS I S S+GT
Sbjct: 2   TAKYVFTTLINAAFLCLASTILSESAGT 29


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = +1

Query: 91  AFLHPWLCAADVARSSTVSSFNCTRADAA 177
           AF  PWL    +   +    F+C   + A
Sbjct: 51  AFSRPWLLQGHIRTHTGEKPFSCQHCNRA 79


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 23  RFPGQLNADLRKLAVNMVPFPRLHFYTP 106
           R+ G L A  RKL  N      +  YTP
Sbjct: 392 RYYGSLQAAARKLLGNAPEVENIWDYTP 419


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 194 FWRRTFAASARVQLKLDTVELLATSAA 114
           FW    A  ARV L + T+  +AT  +
Sbjct: 263 FWLDQSAVPARVSLGVTTLLTMATQTS 289


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 194 FWRRTFAASARVQLKLDTVELLATSAA 114
           FW    A  ARV L + T+  +AT  +
Sbjct: 263 FWLDQSAVPARVSLGVTTLLTMATQTS 289


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 98  RNAGAETAPCSQPTSSDQRSAVQETANTS 12
           RNA  ET  CS    S  R+ +    ++S
Sbjct: 324 RNAFKETCRCSPSNPSITRTGLSSVRDSS 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,890
Number of Sequences: 438
Number of extensions: 2616
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)