Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1201
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    31   0.078
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   1.7  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   3.9  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    25   6.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   6.7  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 31.1 bits (67), Expect = 0.078
 Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 266  FEVT-LSPFPSDAPLTSMDVERALSFAPRRGTAVFQELWRLFAVVVRMLG 412
            FEV  LS FPSD   T   +ER+     R GTAVFQ   R+  VV+  LG
Sbjct: 1371 FEVNGLSHFPSDIEDT---IERSHPRIARGGTAVFQSAGRV-VVVIEALG 1416


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 227 SVSRHTQMRMRWAFEVTLSPFPSDAPLTS-MDVERALSFAPRRGTAVFQELWRLFAVVVR 403
           +V + T     W + +  S      PL   +D E  L F P+   A+   LW LF V+V 
Sbjct: 512 NVKQGTSRSFTWTYILGASVLRLYLPLAIFIDSELILGFPPKYFFALGLVLWMLFQVLVL 571

Query: 404 ML 409
           ++
Sbjct: 572 LV 573


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 426 SRPTFPNIRTTTANSLQSS*KTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNA 262
           S P  P +R     S  S+  TAV     KLN+    +LV+ A   N + +T  A
Sbjct: 266 SSPNTPGLRNLQKKSALSTLLTAVVSERNKLNSPHPPVLVKIAPDLNEEELTDIA 320


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +2

Query: 251 RMRWAFEVTLSPFPSDAPLTSMDVERALSFAPRRGTAVFQELWRLFAVVV 400
           ++ WA E TL+P P+   L   D+   +   P +G     +L  +  + +
Sbjct: 238 KINWALENTLTPIPTTMELVFDDINLII---PEQGVKPLLDLLHVHDITI 284


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 22  SSGTSSIPKFHSSLQDLKQPSLQEPR 99
           S  T+S  K H S   LK+ S  EPR
Sbjct: 255 SDETNSFSKLHQSQFGLKEESSHEPR 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,843
Number of Sequences: 5004
Number of extensions: 27161
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)