Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1201
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0168 + 13758189-13758418,13758888-13759041,13760576-137610... 30 0.93
11_03_0128 - 10437407-10438049,10438097-10438272 29 1.2
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617... 29 1.6
09_04_0500 - 18120287-18122233 29 2.2
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 29 2.2
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 28 3.8
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867... 28 3.8
12_01_0624 - 5137096-5137310,5137923-5138380,5138428-5140070,514... 27 5.0
06_01_0326 + 2372176-2373057,2373146-2373610 27 5.0
04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896... 27 5.0
03_05_0198 + 21890523-21891002 27 5.0
09_03_0046 + 11862923-11863112,11863225-11863406,11863522-118636... 27 6.6
09_02_0325 + 7276650-7276770,7276979-7277055,7277146-7277188,727... 27 6.6
08_02_1080 - 24197514-24199415 27 6.6
05_07_0005 + 26997352-26998674 27 8.7
01_05_0215 + 19374279-19374327,19374629-19374633,19376902-193769... 27 8.7
>10_07_0168 +
13758189-13758418,13758888-13759041,13760576-13761042,
13761361-13761478,13761566-13761622,13761906-13762082,
13762225-13762365,13762458-13762531,13764583-13764738,
13764822-13764895,13764992-13765068
Length = 574
Score = 29.9 bits (64), Expect = 0.93
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = -2
Query: 402 RTTTANSLQSS*KTAVPRRGAKLNARS---TSILVRGASLGNGDSVTSNAHRILIWVWRL 232
R++T+N+ ++ + VP R + + + ILVRG+++ D S +I I + +
Sbjct: 173 RSSTSNTESTAAVSCVPARRSMIEIMAFGVAKILVRGSNMMKSDGAASGERKIGILAFEV 232
Query: 231 TDHLTTASN 205
+ + + SN
Sbjct: 233 ANTIVSGSN 241
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 195 SSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 97
S S + STTCRT RA + C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164
>06_01_0816 -
6171189-6171255,6171277-6171441,6172037-6172618,
6173451-6173761
Length = 374
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 85 GLVVLGPEDWSEISVLNWSQKIS 17
G VV GP W EI + WSQ+ S
Sbjct: 42 GRVVAGPYCWQEIDIQEWSQQQS 64
>09_04_0500 - 18120287-18122233
Length = 648
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 277 AVSVPERRSSDEYGRRARVELRSASWHR 360
AV+V +R S EY +R E RS SW R
Sbjct: 2 AVAVLDRSFSSEYPASSRTEGRSCSWKR 29
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 365 RPRCHDAERSSTRALRPYSSEERR 294
RPR D+E ++ L PYSSE++R
Sbjct: 455 RPRSGDSEIPNSSKLEPYSSEQQR 478
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 292 ERRSSDEYG---RRARVELRSASWHRGLSRALEAVRCRGSDVGKCRPTGR 432
E +E+G R R R RG R AVR RG G+CR GR
Sbjct: 28 ETEEEEEWGVEMERGRGRGRGRGRGRGRGRRGGAVRGRGRGRGRCRGRGR 77
>08_02_0157 -
13385589-13385675,13386187-13386357,13386572-13386792,
13390090-13390240,13390682-13390726,13391121-13391330
Length = 294
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 246 WVWRLTDHLTTASNGSDSSSRGT 178
WV L + +TTASN D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185
>12_01_0624 -
5137096-5137310,5137923-5138380,5138428-5140070,
5140245-5140462,5140589-5140757,5141249-5141305
Length = 919
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 245 QMRMRWAFEVTLSPFPSDAPLTSMDVERALSFAPRRGTAVFQELW 379
++R RW T PF D + + R L+ + RR + +W
Sbjct: 821 RIRRRWYVFYTREPFKLDTNIVCSSISRGLNRSLRRKPFISSSVW 865
>06_01_0326 + 2372176-2373057,2373146-2373610
Length = 448
Score = 27.5 bits (58), Expect = 5.0
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = -2
Query: 360 AVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRILIWVWRLTDHLTTASNGSDSSSRG 181
+VPR G + +RG S G+G SV +++ IW+ DH+ + SN SD
Sbjct: 224 SVPRSGGLIRDSMHHFGIRGESDGDGISVMGSSN---IWI----DHV-SMSNCSDGLIDI 275
Query: 180 TEYSTTCRTARRAYSK 133
T+ ST + ++K
Sbjct: 276 TDGSTAITISNSHFTK 291
>04_04_0791 +
28088237-28088809,28089311-28089430,28089585-28089662,
28089808-28089938,28090390-28090435,28090529-28090636
Length = 351
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +1
Query: 259 MGV*SHAVSVPERRSSDEYGRRARVELRSAS--WHRGLSRALEAVRCRGSDVGK 414
MGV S A + ERRS E RR RVE W A R R D K
Sbjct: 5 MGVNSKAEAARERRSVAEADRRDRVERAKEEEYWREAEGPKSRAARRREEDAEK 58
>03_05_0198 + 21890523-21891002
Length = 159
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 271 SHAVSVPERRSSDEYGRRARVELRSASWHRGLSRALE 381
S + VP R+ S G AR+ S+SW G + A E
Sbjct: 70 SGSAPVPARQWSGGGGGGARIRASSSSWREGAAAAAE 106
>09_03_0046 +
11862923-11863112,11863225-11863406,11863522-11863634,
11863894-11864140,11864333-11864452,11864601-11864604,
11864800-11864846,11864992-11865068,11865381-11865431,
11865519-11865567,11865694-11865718,11866226-11866344
Length = 407
Score = 27.1 bits (57), Expect = 6.6
Identities = 28/97 (28%), Positives = 38/97 (39%)
Frame = -2
Query: 432 AASRPTFPNIRTTTANSLQSS*KTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRI 253
AA+R P +R T A SS +PR + + S++ GASLG S + +
Sbjct: 33 AAARGLPPLVRATAAAIAPSSFCPYLPRLSSARSFSSSTSCSAGASLGGAVSTSPSEQEK 92
Query: 252 LIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRA 142
L T S G S T S TC +A
Sbjct: 93 QRQQSELIFLGTGTSEGIPRVSCLTNPSKTCTVCTKA 129
>09_02_0325 +
7276650-7276770,7276979-7277055,7277146-7277188,
7277276-7277333,7277922-7277991,7278202-7278670,
7278895-7278959
Length = 300
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 410 PTSEPRQRTASRALERPRCHDAERSSTRALRPYSSEERRSGTE 282
PT+ P+ RA +R R + AE S T P+S E SG+E
Sbjct: 231 PTASPKHE---RAAKRQRGNGAEFSETDFALPHSIFESSSGSE 270
>08_02_1080 - 24197514-24199415
Length = 633
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 277 AVSVPERRSSDEYGRRARVELRSASWHR 360
AV+VP+ ++ Y + ++E RS SW R
Sbjct: 2 AVAVPDHTFNNGYSSKNQIEGRSLSWKR 29
>05_07_0005 + 26997352-26998674
Length = 440
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 354 PRRGAKLNARSTSILVRGASLGNG 283
P+ G +LNA S +I+++GA L +G
Sbjct: 156 PKLGVRLNAVSYNIILKGACLRDG 179
>01_05_0215 +
19374279-19374327,19374629-19374633,19376902-19376956,
19377159-19377334,19378020-19378241,19378334-19378572,
19379201-19379726,19379801-19380074,19380524-19381187,
19381604-19381832,19381924-19382190,19382308-19382496,
19382664-19383308
Length = 1179
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 350 RGTAVFQELWRLFAVVVRMLGNVGRLAA 433
+GTA F E++R+F V+V + + R +A
Sbjct: 892 QGTATFAEVFRVFFVLVLGINEISRTSA 919
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,183,285
Number of Sequences: 37544
Number of extensions: 217013
Number of successful extensions: 754
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -