BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS1201 (439 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_55202| Best HMM Match : FIVAR (HMM E-Value=3.7) 31 0.31 SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7) 31 0.31 SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09) 28 3.9 SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1 SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06) 27 5.1 SB_20137| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8 SB_18045| Best HMM Match : rve (HMM E-Value=0.25) 27 6.8 SB_52754| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2) 27 8.9 SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9 >SB_55202| Best HMM Match : FIVAR (HMM E-Value=3.7) Length = 145 Score = 31.5 bits (68), Expect = 0.31 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -1 Query: 430 GQSADISQHPNHDSEQPPELLKDRGATTRSEAQRAL 323 G I+ HP H+S+Q E+L + G T +A R + Sbjct: 93 GVREHIAAHPGHESQQEKEILDENGLITTVDAARII 128 >SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7) Length = 152 Score = 31.5 bits (68), Expect = 0.31 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -1 Query: 430 GQSADISQHPNHDSEQPPELLKDRGATTRSEAQRAL 323 G I+ HP H+S+Q E+L + G T +A R + Sbjct: 24 GVREHIAAHPGHESQQEKEILDENGLITTVDAARII 59 >SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09) Length = 207 Score = 27.9 bits (59), Expect = 3.9 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -2 Query: 366 KTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHR 256 KTAVPRRG K S++ R + + + +TS HR Sbjct: 112 KTAVPRRGVK-GLPLNSVIRRLVDVHSSEGMTSARHR 147 >SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1103 Score = 27.5 bits (58), Expect = 5.1 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -3 Query: 395 RQRTA-SRALERPRCHDAERSSTRALRPYSSEERRSGTE 282 R+R A RALER R + ER R Y E+RR E Sbjct: 605 RERIARERALERERERERERERERRRLEYMREQRRRQEE 643 >SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06) Length = 259 Score = 27.5 bits (58), Expect = 5.1 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 237 RLTDHLTTASNGSDSSSRGTEYST 166 RLT++ +ASNGSD + E ST Sbjct: 2 RLTNYTLSASNGSDDETSNKEVST 25 >SB_20137| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 435 Score = 27.1 bits (57), Expect = 6.8 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -2 Query: 420 PTFPNIRTTTANSLQSS*KTAVPRR 346 PT PNI + T N+ Q++ T VPR+ Sbjct: 353 PTIPNITSATPNATQAT-NTQVPRK 376 >SB_18045| Best HMM Match : rve (HMM E-Value=0.25) Length = 364 Score = 27.1 bits (57), Expect = 6.8 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -1 Query: 439 ILSGQSADISQHPNHDSEQPPELLKD 362 IL Q+ + ++P S +PP+ LKD Sbjct: 324 ILEPQAQPVRRYPTRSSRRPPDYLKD 349 >SB_52754| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2) Length = 347 Score = 26.6 bits (56), Expect = 8.9 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -1 Query: 400 NHDSEQPPELLKDRGATTRSEAQRALYVH 314 NH + K G TR + QRA+Y+H Sbjct: 160 NHKKRLVRDFAKLAGIETREKPQRAIYIH 188 >SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1512 Score = 26.6 bits (56), Expect = 8.9 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -3 Query: 410 PTSEPRQRTASRALERPRCHDAERSSTRALRPYSSEERRSGTET 279 P S P++RT+S A A +S + YS+E SG+E+ Sbjct: 867 PRSPPKRRTSSEAFYTEGLPLAPSTSLTSSSAYSTEGLASGSES 910 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,444,506 Number of Sequences: 59808 Number of extensions: 240775 Number of successful extensions: 696 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 664 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 696 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 847047381 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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