Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1201
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    31   0.48 
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    31   0.48 
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    29   1.5  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    29   1.5  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    28   3.4  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    27   7.9  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    27   7.9  

>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 428 PVGRHFPTSEPRQRTASRALERPRCHDAERSSTRAL--RPYSSEER 297
           P  R  P+ +PR+R+ S   ERPR     R  +R L  +P SS  +
Sbjct: 160 PKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSK 205


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 428 PVGRHFPTSEPRQRTASRALERPRCHDAERSSTRAL--RPYSSEER 297
           P  R  P+ +PR+R+ S   ERPR     R  +R L  +P SS  +
Sbjct: 160 PKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSK 205


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = -2

Query: 336 LNARSTSILVRGASLGNGDSVTSNAHRILIWVWRLTDHLTTASNGSDSSSRGTEYSTTCR 157
           +++ +++I +  +S  +  S T+ A   L  + ++T   T A NG   S  G+  +TTC+
Sbjct: 175 VSSTTSNISLTSSSTQSYSSSTAGATSSLFTI-KVTQSTTAAGNGQGGSGSGSA-TTTCK 232

Query: 156 TARRAYSKARMACDTGGKASWLLKAW 79
            +    S    A     K+  L   W
Sbjct: 233 CSAGDVSATTAASACSEKSGCLKNQW 258


>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 275 TLSPFPSDAPLTSMDVERALSFAPRRGTA 361
           T SP PSD    S+DV+R L+F   R  A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 275 TLSPFPSDAPLTSMDVERALSFAPRRGTA 361
           T SP PSD    S+DV+R L+F   R  A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +2

Query: 227  SVSRHTQMRMRWAFEV-TLSPFPSDAPLTSMDVERALSFAPRRGTAVFQELWRLFAVVVR 403
            + +R T  R+  +  V  LS  PS    TS  +  A SF P       Q     F VVVR
Sbjct: 1791 AAARRTSPRVPMSSNVPALSSRPSSRMSTSSRISTASSFVPESVAVPLQSTGSAFDVVVR 1850

Query: 404  MLG 412
              G
Sbjct: 1851 QSG 1853


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 222 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGGKAS 97
           ++  S G  SSSRG+ Y  T   R+++R+ S++R    +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -3

Query: 434 KRPVGRHFPT---SEPRQRTASRALERPRCHDAERSSTRALRPYSSEERRSGTET 279
           +R  GRH  +   S PR+R   R+  R R     R+ TRA     S+ + S T T
Sbjct: 340 RRRSGRHSRSRSRSPPRKRPVRRSRSRSRSRTPNRNWTRARSRTRSQAKSSSTLT 394


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -3

Query: 425  VGRHFPTSEPRQRTASRALERPRC-HDAERSSTRALRPYSSEERRSGTETA*LQTPIAFS 249
            +G  F  S       SR +  P+C  DAER+ +R+    S+  RRS  +    + PI  S
Sbjct: 1569 LGTRFVHSSEGDLLVSRYVLCPQCVRDAERNGSRSRTSSSASHRRSQDDG---ELPITSS 1625

Query: 248  FGYGGSLIT 222
                GS  T
Sbjct: 1626 SHMKGSRTT 1634


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -3

Query: 425  VGRHFPTSEPRQRTASRALERPRC-HDAERSSTRALRPYSSEERRSGTETA*LQTPIAFS 249
            +G  F  S       SR +  P+C  DAER+ +R+    S+  RRS  +    + PI  S
Sbjct: 1567 LGTRFVHSSEGDLLVSRYVLCPQCVRDAERNGSRSRTSSSASHRRSQDDG---ELPITSS 1623

Query: 248  FGYGGSLIT 222
                GS  T
Sbjct: 1624 SHMKGSRTT 1632


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,513,891
Number of Sequences: 27780
Number of extensions: 156604
Number of successful extensions: 492
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)