Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1201
(439 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10350.1 68417.m01700 no apical meristem (NAM) family protein... 34 0.036
At5g63540.1 68418.m07975 expressed protein ; expression support... 33 0.064
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ... 31 0.34
At4g30160.1 68417.m04289 villin, putative similar to villin 2 (... 29 1.8
At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /... 29 1.8
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 28 2.4
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC... 28 3.2
At5g19560.1 68418.m02329 hypothetical protein contains Pfam prof... 27 7.3
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 26 9.7
At5g17440.1 68418.m02046 LUC7 N_terminus domain-containing prote... 26 9.7
At3g57120.1 68416.m06359 protein kinase family protein contains ... 26 9.7
At2g28940.2 68415.m03518 protein kinase family protein contains ... 26 9.7
At1g28280.1 68414.m03471 VQ motif-containing protein contains PF... 26 9.7
>At4g10350.1 68417.m01700 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
nap gene, Arabidopsis thaliana, gb:AJ222713
Length = 341
Score = 34.3 bits (75), Expect = 0.036
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 303 GASLGNGDSVTSNAHRILIWVWRLTDHLTTASNGSDSSSRGTEY 172
G +G ++V S+ H+ + W + D L T G++ SSRG Y
Sbjct: 265 GLDVGTCETVASHNHQQGLGEWAMMDRLVTCHMGNEDSSRGITY 308
>At5g63540.1 68418.m07975 expressed protein ; expression supported
by MPSS
Length = 602
Score = 33.5 bits (73), Expect = 0.064
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = -2
Query: 417 TFPNIRTTTAN--SLQSS*KTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRILIW 244
TF +I +T++N S+ T GA ARS + V G SL +VTS + I
Sbjct: 340 TFSDIHSTSSNIHRAASTAGTGTSCSGACSGARSFANNVGGNSLDQTSNVTSFVEEMHID 399
Query: 243 VWRLTDHLTTASNGSDSSSRGTEYS 169
R+ D TT GSDS E+S
Sbjct: 400 TGRVRD-TTTHIYGSDSGGVAAEFS 423
>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
similar to PR-1a protein [Nicotiana tabacum] GI:19944;
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 164
Score = 31.1 bits (67), Expect = 0.34
Identities = 22/85 (25%), Positives = 35/85 (41%)
Frame = -2
Query: 360 AVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRILIWVWRLTDHLTTASNGSDSSSRG 181
A R+G S S + G +L S A + +WV +D++ ++ SD G
Sbjct: 62 AQQRKGDCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGKQCG 121
Query: 180 TEYSTTCRTARRAYSKARMACDTGG 106
RT+ A++ CD GG
Sbjct: 122 HYTQVVWRTSEWV-GCAKVKCDNGG 145
>At4g30160.1 68417.m04289 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 974
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 289 PERRSSDEYGRRARVELRSASWHRGLSRALEAVRCRG 399
P+RR+ YG RA V +S R +S + + VR RG
Sbjct: 749 PKRRTPASYGGRASVPDKSQQRSRSMSFSPDRVRVRG 785
>At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Lycopersicon
esculentum] GI:4325090; contains PF00295: Glycosyl
hydrolases family 28
Length = 471
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -2
Query: 297 SLGNGDSVTSNAHRILIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARM 124
S G G + HR LI+ LTD + T NG+ +GT + R Y++ +
Sbjct: 125 SYGRGRELPGRRHRSLIYGQNLTDVVITGENGT-IDGQGTVWWDWFRNGELNYTRPHL 181
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 243 VWRLTDHLTTASNGSDSSSRGTEYSTT 163
+W + DH+T A GSDS S G+ + T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259
>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
Drosophila melanogaster, EMBL:AF186472
Length = 566
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 37 SIPKFHSSLQDLKQPSLQEPRCLATRV 117
++ K SS +DL L+ PRCLA+ V
Sbjct: 21 NVSKGKSSSEDLTNVKLESPRCLASNV 47
>At5g19560.1 68418.m02329 hypothetical protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 493
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 19 KSSGTSSIPKFHSSLQDLKQPSLQEPRCLATRVTGHARL 135
K S S I FH Q+ ++P ++ PR L + + A+L
Sbjct: 445 KHSSMSDIEFFHKVEQEKEKPMMKSPRALPKKFSYLAKL 483
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 272 VTLSPFPSDAPLTSMDVERALSFAPRRGTAVFQELWRLFAVVVRMLG 412
+T SP PS P T V++AL R + W + +M+G
Sbjct: 432 ITKSPLPSIDPETVKKVQKALCHVEMRNKEAAYQAWLGYYNSQKMIG 478
>At5g17440.1 68418.m02046 LUC7 N_terminus domain-containing protein
contains Pfam domain PF03194: Protein of unknown
function, DUF259
Length = 404
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 404 SEPRQRTASRALERPRCHDAERSSTR 327
S R+ + SR+ ERPR HD R R
Sbjct: 378 SRSRRSSRSRSRERPRDHDRRRRHDR 403
>At3g57120.1 68416.m06359 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 456
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 416 HFPTSEPRQRTASRALERPRCHDAERSSTRALR 318
HF T++ T +LER ++ RS +RA+R
Sbjct: 276 HFGTAQLCGETDEMSLERDESRNSRRSDSRAIR 308
>At2g28940.2 68415.m03518 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 462
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -2
Query: 327 RSTSILVRGASLGNGDSVTSNAHRILIWVWRLTDHLTTASNGSDSSSRGTEYS 169
R+T+ + G +G GDSV S A R L W L+ +T S+ + S +++S
Sbjct: 12 RTTTTIEEG--VGGGDSVVSRASR-LSWARSLSVASSTTSDPTRRSEFDSDWS 61
>At1g28280.1 68414.m03471 VQ motif-containing protein contains
PF05678: VQ motif
Length = 247
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 404 SEPRQRTASRALERPRCHDAERS 336
+ PR R A+ + PRCH++ S
Sbjct: 3 NSPRYREATNLIPSPRCHNSNNS 25
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,261,024
Number of Sequences: 28952
Number of extensions: 155412
Number of successful extensions: 523
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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