Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1200
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.51 
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    27   2.1  
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.3  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.4  

>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -2

Query: 345 FFLXLXIMFLY-DYRRFIYVDKLSIFXCFY--YVLSLEV 238
           + L +  +FLY +Y  F  V+ LS+F C Y  Y L LEV
Sbjct: 55  YLLLIVPLFLYPEYWAFKLVELLSLFYCAYVMYFLPLEV 93


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 23  PCNYVYKVFILNTILLXFRTLSCKY 97
           P  +  ++ I+NTI++ F T+ C Y
Sbjct: 30  PLTWPIRIRIINTIIISFMTMLCMY 54


>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 323 CSCTIIXGSYMWINCQFSPVSTTSC 249
           C+CT I G    I+  FS    T+C
Sbjct: 144 CTCTAIAGIVFTISAVFSKTPKTAC 168


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 333 LXIMFLYDYRRFIYVDKLSIFXCFYY 256
           L + F Y Y +F++V + S    +YY
Sbjct: 205 LKLFFRYQYSQFLFVYRESFLSDYYY 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,989
Number of Sequences: 5004
Number of extensions: 24160
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)