Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1200
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL032625-3|CAB63349.1|  514|Caenorhabditis elegans Hypothetical ...    27   7.6  
U80837-8|AAB37908.1|  412|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical protein
            D2005.5 protein.
          Length = 1119

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 193  HIALIFSKYKPI-ALIWRVVHIHFXRKISKXL 101
            +I  +FS Y      +WR +H+   RK+SK L
Sbjct: 964  YIKKVFSNYMVFDPSVWRFLHVESKRKVSKYL 995


>AL032625-3|CAB63349.1|  514|Caenorhabditis elegans Hypothetical
           protein Y37H9A.1a protein.
          Length = 514

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 297 IYVDKLSIFXCFYYVLSLEVXFGDF 223
           I+ +K+SIF  F+ +L  E  F DF
Sbjct: 307 IFRNKISIFLDFFQILHAEALFADF 331


>U80837-8|AAB37908.1|  412|Caenorhabditis elegans Hypothetical
           protein F07E5.9 protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 298 EPXIIVQEHDXQPQEKXCXTTKDXFWDR 381
           +P + V E   + +EK C  +K  +WD+
Sbjct: 236 KPAVSVDEKHEKQKEKNCGYSKKHYWDK 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,762,090
Number of Sequences: 27780
Number of extensions: 133239
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)