Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1200
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.1  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 366 VFSSTTXFFLXLXIMFLYDYR 304
           +FSST  F+L L +M    Y+
Sbjct: 208 IFSSTISFYLPLFVMVFTYYK 228


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 112 IFFXKNGYEQPSKSKLLVCT*RRSE 186
           + + +N YEQPS+  L   T + SE
Sbjct: 342 LVYFQNEYEQPSEEDLKRITNQPSE 366


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 297 IYVDKLSIFXCFYYVLS 247
           I + K +I  CF YVLS
Sbjct: 270 IRIAKAAITICFLYVLS 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,896
Number of Sequences: 438
Number of extensions: 1559
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)