Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1199
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    88   7e-19
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    83   1e-17
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    29   0.44 
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    28   0.58 
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   1.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   3.1  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   5.4  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   5.4  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   7.1  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   7.1  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   7.1  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 87.8 bits (208), Expect = 7e-19
 Identities = 43/65 (66%), Positives = 49/65 (75%)
 Frame = +1

Query: 37  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVXFVFG 216
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   +    FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 217 FKTNF 231
            +T+F
Sbjct: 60  LRTHF 64



 Score = 44.8 bits (101), Expect = 6e-06
 Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = +3

Query: 255 ALIYDTLDLAKXFEPKHRLARHGLYEK-KRPTRKQRIERKNRMKKV 389
           ALIYD+ +  K FEP +RL R G  E  ++  R+QR +RKNR KKV
Sbjct: 73  ALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKV 118


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 83.4 bits (197), Expect = 1e-17
 Identities = 39/65 (60%), Positives = 47/65 (72%)
 Frame = +1

Query: 37  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVXFVFG 216
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK        FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 217 FKTNF 231
            +T++
Sbjct: 60  LRTHY 64



 Score = 44.8 bits (101), Expect = 6e-06
 Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = +3

Query: 255 ALIYDTLDLAKXFEPKHRLARHGLYEK-KRPTRKQRIERKNRMKKV 389
           ALIYD ++  K FEP +RL R G  E  ++  R+QR +RKNR KKV
Sbjct: 73  ALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKV 118


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 16/70 (22%), Positives = 27/70 (38%)
 Frame = +3

Query: 210  IRFQDKLRRWQVNWIALIYDTLDLAKXFEPKHRLARHGLYEKKRPTRKQRIERKNRMKKV 389
            I +   L++  + W A   + LDL   F PK  + +   +E   P+ K  +   N     
Sbjct: 1187 IAYTKLLQQKFIQWRATYAEQLDLWGFFIPKLEMLKFNAHEFSSPSEKTLVNHCNSCNST 1246

Query: 390  XRYQEIXSRC 419
                 I  +C
Sbjct: 1247 TSNTRICEKC 1256


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 177 NVQGYSRCXVRIRFQDKLRRWQVNWIALIYDTLDLAKXFEP--KHRLARHGLYEKKRPTR 350
           N + Y+R  V     D+  R+  N        LD    FE   KH    + L ++K+   
Sbjct: 341 NFEPYTRWSVAQAKFDQDPRYTRNSNMKYLSKLDALVAFEDHVKHLEREYILDKQKQKKE 400

Query: 351 KQRIERKNR 377
           K RIERKNR
Sbjct: 401 KHRIERKNR 409


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 302 LGLEXLGQIEC-VVDQSNPVDLPPPKFVLKPNTNXTSGVTLYILASFSRISVLL 144
           L  + +  I C ++D S  +DLPPP  ++KP    T      +L   +R S +L
Sbjct: 553 LDRKSISNICCYMMDASTHIDLPPPA-IIKPRCLWTGKQVFTVLMKPNRFSKVL 605


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 69  ASANSRCSFTHFELFSII 16
           +S  SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 317 PRPVREEEAHAQTAYRT*EQNEEGXAVPRNL 409
           P P+ EEEA +       E+ +E  A+P+ L
Sbjct: 490 PEPIDEEEAFSDDEEEEPEEIKERIAIPKTL 520


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 291 FEPKHRLARHGLYEKKRPTRKQRIERKNRMKK 386
           + P  R    G + +KR  RK++ E+KN   K
Sbjct: 540 YRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 291 FEPKHRLARHGLYEKKRPTRKQRIERKNRMK 383
           F  KH L RHG  EKKR   K    R++  K
Sbjct: 59  FGTKH-LRRHGRIEKKRRNWKGLFRRQSNWK 88


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 164 SRISVLLTVGFPGCKTSQTICLRANNL 84
           SRI  + ++G    K  Q++CLR N +
Sbjct: 48  SRIQSMASLGLERFKNLQSLCLRQNQI 74


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 45  RNSDYSHSQVHDQQIVGAQADGLRCFTSRKTNRQQDRDP 161
           +NS++S +   +Q    + ADG R +   +   Q+ R+P
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNP 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,687
Number of Sequences: 5004
Number of extensions: 33337
Number of successful extensions: 108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)