Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1199
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 84 6e-17
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 80 7e-16
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 80 7e-16
05_05_0006 + 21450739-21451434 31 0.32
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340... 30 0.99
04_01_0254 + 3388215-3388553,3388869-3390830 29 1.3
01_06_0355 + 28657833-28660665,28660762-28661126 28 3.0
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 4.0
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 4.0
02_02_0445 - 10351483-10351606,10351987-10353170 27 5.3
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 27 5.3
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890 27 7.0
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 27 7.0
01_06_0733 - 31563246-31563462,31563721-31563947,31563983-315640... 27 7.0
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 27 9.2
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 83.8 bits (198), Expect = 6e-17
Identities = 38/60 (63%), Positives = 50/60 (83%), Gaps = 1/60 (1%)
Frame = +1
Query: 55 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVXFVFGFKTNF 231
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Score = 58.8 bits (136), Expect = 2e-09
Identities = 29/66 (43%), Positives = 38/66 (57%)
Frame = +3
Query: 192 SRCXVRIRFQDKLRRWQVNWIALIYDTLDLAKXFEPKHRLARHGLYEKKRPTRKQRIERK 371
+ C +F+ + LIYD LD AK +EPK+RL R+GL K +RKQ ERK
Sbjct: 58 ANCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERK 117
Query: 372 NRMKKV 389
NR KK+
Sbjct: 118 NRAKKI 123
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 80.2 bits (189), Expect = 7e-16
Identities = 37/60 (61%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Frame = +1
Query: 55 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVXFVFGFKTNF 231
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Score = 35.9 bits (79), Expect(2) = 3e-05
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 192 SRCXVRIRFQDKLRRWQVNWIALIYDTLDLAKXFEPKHRLAR 317
S C +F+ + LIYD LD AK +EPK+RL R
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 28.3 bits (60), Expect(2) = 3e-05
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 318 HGLYEKKRPTRKQRIERKNRMKKV 389
+GL K +RKQ ERKNR KK+
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKI 151
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 80.2 bits (189), Expect = 7e-16
Identities = 37/60 (61%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Frame = +1
Query: 55 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVXFVFGFKTNF 231
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Score = 60.1 bits (139), Expect = 8e-10
Identities = 30/66 (45%), Positives = 38/66 (57%)
Frame = +3
Query: 192 SRCXVRIRFQDKLRRWQVNWIALIYDTLDLAKXFEPKHRLARHGLYEKKRPTRKQRIERK 371
S C +F+ + LIYD LD AK +EPK+RL R+GL K +RKQ ERK
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERK 117
Query: 372 NRMKKV 389
NR KK+
Sbjct: 118 NRAKKI 123
>05_05_0006 + 21450739-21451434
Length = 231
Score = 31.5 bits (68), Expect = 0.32
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -3
Query: 429 LEGRTYXRFLGTAXPSSFCSYVLYAVCAWASSSRTGRGGLTCAWARTSW 283
L GR R +A PSS S A A+ S+S TG T ++ SW
Sbjct: 55 LGGRAVSRPKSSAPPSSSASTTTTAAAAFTSTSTTGASATTVDSSKESW 103
>09_02_0042 -
3402424-3402534,3403242-3403345,3403448-3403562,
3404344-3404391,3404519-3404608,3404819-3404893,
3405001-3405153,3405695-3405779,3408051-3408121,
3408243-3408293,3409037-3409453,3409529-3409660,
3409779-3409892,3411113-3411179,3411264-3411397,
3411486-3411701,3412627-3413418
Length = 924
Score = 29.9 bits (64), Expect = 0.99
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 182 TRLLPMXCSYSVSRQTSEVASQLDCFDLRHTRSGQXVRAQAQVSPPRPVREEEAHAQTAY 361
++ LP S S + V+S+ + +L H G+ R VS P P +E H + +
Sbjct: 43 SQTLPRFASSSAAVAAESVSSE-EVDELHHA-IGEIARGDPSVSAPAPAAGQEGHRRRSG 100
Query: 362 RT*EQNEEGXAVP 400
R + + E AVP
Sbjct: 101 RG-KHSAEAMAVP 112
>04_01_0254 + 3388215-3388553,3388869-3390830
Length = 766
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 249 WIALIYDTLDLAKXFEPKHRLARHGLYEKKRPTRKQRIERKNRMKK 386
WI+ + +AK FE + + G E R +RK+ ++K M++
Sbjct: 137 WISSFVCLMAIAKYFEGAYYALQRGNLENMRSSRKEEEKKKENMRR 182
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 215 PNTNXTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 36
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.9 bits (59), Expect = 4.0
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 45 RNSDYSHSQVHDQ--QIVGAQADGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCXVRIRF 218
R+SD ++ + D+ Q VG +D R T + +QD+ E + + + R
Sbjct: 761 RSSDRTNQRDRDRNDQDVGRTSDERREKTHDREKDKQDKPKSENKNILDAKQLIDMIPRT 820
Query: 219 QDKLRRWQVNWIALIYDTLDLAKXFEP 299
+++L + +NW IYD +L + P
Sbjct: 821 KEELFAYDINW--AIYDKHELHERMRP 845
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -1
Query: 164 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 36
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>02_02_0445 - 10351483-10351606,10351987-10353170
Length = 435
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +2
Query: 266 RHTRSGQXVRAQAQVSPPR--PVREEEAHAQTAYRT*EQNEE-GXAVPRNLX*VRPSRSD 436
R R+ Q +R Q ++ P P+ EEE ++ Y T ++E+ G A+ + + + R
Sbjct: 132 RRIRARQLLREQEELLPQEEEPIEEEEESEESEYETDSEDEQTGMAMVKPVFIPKSQRDT 191
Query: 437 VNAR 448
+ R
Sbjct: 192 IAER 195
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 263 LRHTRSGQXVRAQAQVSPPRPVREEEAHAQTAY 361
+R + G AQ+ PPRPV + +HA Y
Sbjct: 159 VRTSEHGDEQLTGAQLRPPRPVEADASHAVGGY 191
>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
Length = 216
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +3
Query: 189 YSRCXVRIR-FQDKLRRWQVNWI 254
+ RC VR+ F KLR W ++W+
Sbjct: 134 FLRCVVRVNNFPTKLRPWDLSWL 156
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 221 RQTSEVASQLDCFDLRHTRSGQXVRAQAQVSPPRPVREEEAHAQTAYRT*EQ 376
R+ S +SQ RH + + ++ A VS PR E H T R +Q
Sbjct: 305 RRPSSASSQRPSVGERHRIARESIKKPADVSTPRRPSTAERHPVTTERARKQ 356
>01_06_0733 -
31563246-31563462,31563721-31563947,31563983-31564018,
31564750-31564862,31565872-31565950,31566739-31566956,
31567041-31567146,31568518-31568730
Length = 402
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 245 QLDCFDLRHTRSGQXVRAQAQVSPPRPVREEEAHAQTAYRT 367
+L + H RSG+ R + ++SP P R+ + R+
Sbjct: 182 ELSSVNSMHQRSGEDFRQEHEISPVAPHRDVRVYVDNVVRS 222
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 186 LVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANSR 52
LV FG+ +T+L ADG W +A+H + V + N+R
Sbjct: 5 LVLFGDSITELSFADG--GWGAALADHFARKADVVLRGFSGYNTR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,486
Number of Sequences: 37544
Number of extensions: 233065
Number of successful extensions: 702
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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