Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1199
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 0.77
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_51415| Best HMM Match : zf-CCCH (HMM E-Value=1.1) 29 2.3
SB_22216| Best HMM Match : PGAMP (HMM E-Value=4) 28 3.1
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 28 4.1
SB_24599| Best HMM Match : Complex1_24kDa (HMM E-Value=0) 28 4.1
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 27 5.4
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
>SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 795
Score = 30.3 bits (65), Expect = 0.77
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -1
Query: 272 CVVDQSNPVDLPPPKF-VLKPNTNXTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLR 96
C D ++ ++ PPPKF + + T V L +L F + V++ T C
Sbjct: 6 CCNDSNSSINSPPPKFSITTIAVSSTFVVILLLLTVFGNVLVIMAFKVFHRMRQVTNCFV 65
Query: 95 ANNLLVMNLRVRIVAVP 45
A +L V ++ V + A+P
Sbjct: 66 A-SLAVTDILVAVFAMP 81
>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 297 PKHRLARHGLYEKKRPTRKQRIERKNRMKK 386
P+ L H L ++ R R+QR+ER++R+K+
Sbjct: 21 PQQILFTHRLEQRYRVERRQRLERRHRVKR 50
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 201 YIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANS 55
+I N +F + DLG+A + + + +H L R Q+VGH A S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336
>SB_51415| Best HMM Match : zf-CCCH (HMM E-Value=1.1)
Length = 332
Score = 28.7 bits (61), Expect = 2.3
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Frame = +3
Query: 57 YSHSQVHDQQIVGAQADGLRCFTSRKTNRQQDRDP*EARQNVQG--YSRCXVRIRFQDK- 227
Y +H +VG ++DG S+ RQ D D +++ +G +S + D+
Sbjct: 37 YLEESIHQDGLVGGESDG-----SQACGRQNDEDIKADQESEEGEVFSETDEDGQVVDQP 91
Query: 228 --LRRWQVNWIALIYDTL--DLAKXFEPKHRLARHGLY-EKKRPTRKQRIERKNRMKKVX 392
+++ N L+ D K +P R + LY ++KR + ++IE+K +++
Sbjct: 92 TDIKQKSENVSVLVKPDCKQDAVKEQKPSGRKLKRKLYKQRKRQEKFKKIEKKKAIREQK 151
Query: 393 RYQEIXSRCGLQ 428
+ + R L+
Sbjct: 152 QQKAAIQRYNLR 163
>SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)
Length = 132
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 360 YAVCAWASSSRTGRGGLTCAWARTSWPDRVCRRSKQSS 247
Y CA S G+ C +A + PD RRS +SS
Sbjct: 62 YGTCAMPDSGIPPPPGVLCRYAPCAMPDPKMRRSNRSS 99
>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1074
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 177 FGELLTDLGLADGWFSWM*NIANHLLA 97
FGEL+ D G + F+W+ N++N +LA
Sbjct: 76 FGELMLDAGWSRNAFNWL-NMSNSMLA 101
>SB_24599| Best HMM Match : Complex1_24kDa (HMM E-Value=0)
Length = 487
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -1
Query: 407 DFL-VPRDLLHSVLTFYTLFARGPL 336
DFL +PR ++ V TFYT+F R P+
Sbjct: 86 DFLNMPRMRVYEVATFYTMFNREPV 110
>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3464
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 294 EPKHRLARHGLYEKKRPTRKQRIERKNRMKKVXRYQEIXSRCGLQEV 434
E + RL + L ++KR ++ ERK + + + R QE R LQ V
Sbjct: 2531 EGRVRLLKEQLEQRKREAQRLYHERKRQRRAMLRAQEASLRKELQAV 2577
>SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 688
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 285 KXFEPKHRLARHGLYEKKRPTRKQRIERKNRMKK 386
K E KH++ R + KK+ T QR+E K ++
Sbjct: 202 KEIEEKHKVIRVKVESKKQITEPQRLEEKEEKQR 235
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -1
Query: 224 VLKPNTNXTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVM 75
V+ NT ++ +T +F I +++T C++S TI + NN + +
Sbjct: 137 VIINNTIISTKITTSTTTTFIIIIIIITTSSHHCRSSTTIVVTTNNTITI 186
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 207 RIRFQDKLRRWQVNWI-ALIYDTLDLAKXFEPKHRLARHGLYEKKRPTRKQRIERKNR 377
+++ + K+ R + + A + +T++L + + K A H L+E + K +IE +++
Sbjct: 1900 KLKTEAKILREETERLKAQLEETMNLKEELQDKLHTAEHELFEARTSEEKAKIEHRDK 1957
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,845,829
Number of Sequences: 59808
Number of extensions: 262487
Number of successful extensions: 637
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -