Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1199
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...    86   1e-17
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    42   2e-04
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    29   1.2  
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    28   3.6  
Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine rece...    27   6.3  
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...    27   6.3  
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe...    27   6.3  
AL132876-23|CAD92403.1|  210|Caenorhabditis elegans Hypothetical...    27   6.3  
U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine rece...    27   8.3  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = +1

Query: 55  TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVXFVFGFKT 225
           TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD    FGF++
Sbjct: 6   TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFES 62



 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
 Frame = +3

Query: 216 FQDKLRRWQVNWIALIYDTLDLAKXFEPKHRLARHGLYEK-KRPTRKQRIERKNRMKKV 389
           F+ K+   +    AL+YDT+D AK FEPK+RL R GL  K ++P RKQR ERKNR KKV
Sbjct: 60  FESKIGGGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKV 118


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 106 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPD 198
           MV +V+ PG+PT  K +IREK+A  Y + PD
Sbjct: 1   MVAEVILPGRPTTLKADIREKIANFYNINPD 31


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 258 LIYDTLDLAKXFEPKHRLARHGLYEKKRPTRKQRIERKNR 377
           L+YDT D A  ++P+H  + H      R +  +R E++ R
Sbjct: 57  LVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -1

Query: 167 FSRISVLLTV-GFPGCKTSQTICL-RA-NNLLVMNLRVRIVAVPSLILNY 27
           FS + V L V GF    +   ICL RA NN++V+ +   I   P+L+L+Y
Sbjct: 22  FSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71


>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 276 DLAKXFEPKHRLARHGLYEKKRPTRKQRIE-RKNRMKKVXRYQEIXSRCG 422
           D+    E K ++     +E+K+   K  ++ +KN   K+ +YQ+I    G
Sbjct: 151 DVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALG 200


>U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein73 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = -1

Query: 122 KTS-QTICL-RA-NNLLVMNLRVRIVAVPSLILNY 27
           KTS   ICL RA NN++V+     ++  PSL+L+Y
Sbjct: 4   KTSFNVICLTRAVNNIIVLVFNFLVITFPSLLLSY 38


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 276 DLAKXFEPKHRLARHGLYEKKRPTRKQRIE-RKNRMKKVXRYQEIXSRCG 422
           D+    E K ++     +E+K+   K  ++ +KN   K+ +YQ+I    G
Sbjct: 151 DVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALG 200


>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
           defective protein 45 protein.
          Length = 1076

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 327 YEKKRPTRKQRIERKNRMKKVXRYQEIXSR 416
           YEK RPT  +RI R+ +M  +  Y+E   R
Sbjct: 568 YEKNRPTEIERIHRRKKM--LENYKENWER 595


>AL132876-23|CAD92403.1|  210|Caenorhabditis elegans Hypothetical
           protein Y105E8A.28 protein.
          Length = 210

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 269 HTRSGQXVRAQAQVSPPRPVREEEAHAQTAYRT*EQNEEG 388
           H R+ +  R +  V PP+   E E  A  A    EQN  G
Sbjct: 26  HLRNEELHRFRQAVPPPQQAEEAEEEADVAENVVEQNRLG 65


>U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine
           receptor, class t protein13 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 384 SSFCSYVLYAVCAWASSSRTGRGGLTC 304
           +SFC+Y L+  CA +    +  GG  C
Sbjct: 99  ASFCNYPLFVFCAGSIGLGSWMGGCVC 125


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 120 NIANHLLARQQSVGHELASANSRCSFTHFELFSI 19
           N  NH+L++ + V H ++ ANSR +    E+ +I
Sbjct: 784 NEENHILSQTRPVSHPVSRANSRPTTPGLEIKTI 817


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,034,855
Number of Sequences: 27780
Number of extensions: 194157
Number of successful extensions: 568
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)