Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1199
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...    91   3e-19
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ...    88   2e-18
At5g26850.1 68418.m03203 expressed protein                             27   4.4  
At4g22540.2 68417.m03252 oxysterol-binding family protein simila...    27   7.7  
At4g22540.1 68417.m03253 oxysterol-binding family protein simila...    27   7.7  
At4g12460.1 68417.m01971 oxysterol-binding family protein simila...    27   7.7  
At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N domain-...    27   7.7  

>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score = 91.1 bits (216), Expect = 3e-19
 Identities = 43/66 (65%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
 Frame = +1

Query: 37  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVXFVF 213
           M+E   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+  FVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 214 GFKTNF 231
            F+T+F
Sbjct: 61  KFRTHF 66



 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 27/44 (61%), Positives = 33/44 (75%)
 Frame = +3

Query: 258 LIYDTLDLAKXFEPKHRLARHGLYEKKRPTRKQRIERKNRMKKV 389
           LIYDT++ AK FEPK+RL R+GL  K   +RKQ  ERKNR KK+
Sbjct: 76  LIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKI 119


>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
           ribosomal protein S19, Cyanophora paradoxa,
           EMBL:CPA245654
          Length = 133

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 42/66 (63%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
 Frame = +1

Query: 37  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVXFVF 213
           M+E   TIRTR FMTNRLLARKQ V DVLHPG+  VSK E++EKLA+MY+V  P+  F F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 214 GFKTNF 231
            F+T+F
Sbjct: 61  KFRTHF 66



 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 27/44 (61%), Positives = 33/44 (75%)
 Frame = +3

Query: 258 LIYDTLDLAKXFEPKHRLARHGLYEKKRPTRKQRIERKNRMKKV 389
           LIYDT++ AK FEPK+RL R+GL  K   +RKQ  ERKNR KK+
Sbjct: 76  LIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKI 119


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 76  MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVXFVFGFKTN 228
           M +++     ++ D++    P +SK E  + K+  + + TPD  F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753


>At4g22540.2 68417.m03252 oxysterol-binding family protein similar
           to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
           cuniculus}; contains Pfam profiles PF00169: PH domain,
           PF01237: Oxysterol-binding protein
          Length = 510

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 297 PKHRLARHGLYEKKRPTRKQRIERKNRMKK 386
           P  R   +G YEK     KQR+ER+ RM +
Sbjct: 428 PDQRHLENGEYEKAN-LEKQRLERRQRMSR 456


>At4g22540.1 68417.m03253 oxysterol-binding family protein similar
           to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
           cuniculus}; contains Pfam profiles PF00169: PH domain,
           PF01237: Oxysterol-binding protein
          Length = 721

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 297 PKHRLARHGLYEKKRPTRKQRIERKNRMKK 386
           P  R   +G YEK     KQR+ER+ RM +
Sbjct: 639 PDQRHLENGEYEKAN-LEKQRLERRQRMSR 667


>At4g12460.1 68417.m01971 oxysterol-binding family protein similar
           to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 694

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 297 PKHRLARHGLYEKKRPTRKQRIERKNRMKK 386
           P  R   +G YEK     KQR+ER+ RM +
Sbjct: 612 PDQRHLENGEYEKANE-EKQRLERRQRMSR 640


>At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 646

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 321 GLYEKKRPTRKQRIERKNRMKKVXRYQEIXSRC 419
           G    KR   +Q+ ERK++ +K  R QE+  +C
Sbjct: 116 GADNDKREKVRQKNERKHQRQKERRAQELNEKC 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,446,508
Number of Sequences: 28952
Number of extensions: 180199
Number of successful extensions: 465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)