Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1198
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   3.8  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   5.0  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   6.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.6  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 564 YIYSLFRDQMTDDRELA--VCSSVVTSKYWKSFARAWTL 454
           ++Y +  ++   D +L   VCS VV  K  K+F R W +
Sbjct: 146 FLYHVLSNENALDVDLIGNVCSYVVRDKLLKAFTR-WRM 183


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 71  DKKKQGHKTSVRYL 112
           DK+KQG KT +++L
Sbjct: 79  DKQKQGAKTVIQHL 92


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 5/23 (21%), Positives = 13/23 (56%)
 Frame = -3

Query: 501 VVTSKYWKSFARAWTLTSLPSRS 433
           ++ SK+W +  + W+   +  R+
Sbjct: 133 IIISKHWVTIMKEWSFMEMSMRN 155


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 504 KSRPQALYRRSFGP 545
           K RP ++Y+R + P
Sbjct: 207 KERPDSIYQREYSP 220


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,026
Number of Sequences: 336
Number of extensions: 2807
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)