Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1198
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    29   0.76 
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    28   1.3  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   3.1  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    26   5.4  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   7.1  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.4  

>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 89  HKTSVRYLINIXNNRNQEAIAAEIGFFHPRLDKEVVIKSNAVF 217
           H    R + NI N + +++I  +  ++H +   E +IK+ A F
Sbjct: 120 HVPDERLVSNIKNTQTKDSITRDSAYYHRKTMTESIIKTLAAF 162


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 374 KEXWTVQSKAKTQQAKLRFKLLEGKEVSVQA 466
           +E W ++S  KT + K R+K +    V+V A
Sbjct: 148 REQWALESAKKTDEVKARYKEISDSLVAVSA 178


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 14  YPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINIXNNRNQEAIAAEIGFFHPRLDKEV 193
           Y    ++ Y+   EA + +DK K   K +        +N+N      ++GFF P+ + ++
Sbjct: 150 YAKKQENAYL---EAVMQMDKSKSRFKGAETEYNRALDNKNTGDSQKKVGFFKPKSNAQL 206


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 585 DRMISXGYIYSLFRDQMTDDRELAVCSSVVTSKYWKSF 472
           D+ +  GY YSL +D  +++ ++A   S+   K+ + F
Sbjct: 124 DQPLGTGYSYSLAKDFQSNNEKMANDFSIFFEKFLEEF 161


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +1

Query: 217 QGPGTKSIYSRIIVSLCHSSLGADRVFKLXVDVXP 321
           Q PG  + ++ ++ SLC ++  A ++++L  +  P
Sbjct: 494 QIPGIITAFTLLLASLCKNTTSASKIYELFSEPIP 528


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 111 RYLTEVLCPCFFLSRSRQASPLNIYGESLLVGYVTVV 1
           R+     CP +F+ +S + S +  +  S L GY  +V
Sbjct: 41  RHNALTFCPYYFIEKSGKGSVVYFHPTSDLCGYKNIV 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,996
Number of Sequences: 5004
Number of extensions: 48306
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)