Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1198
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_59233| Best HMM Match : Involucrin (HMM E-Value=2.5)                30   1.4  
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  

>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1444

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +2

Query: 326 NSFSWXKHHLXRL*T*KE-XWTVQSKAKTQQAKLRFKLLEGKEVSVQALAKDFQYFEVTT 502
           NSF   + HL RL + +E  +  QS+ + +Q +LR + L  ++  +Q   K  + F++T 
Sbjct: 295 NSFQEQERHLERLISQQEAVYRQQSEQQKEQQRLR-EELAAQQNKIQEQLKILENFQLTR 353

Query: 503 EEQTASSLSS 532
           E +  +S +S
Sbjct: 354 ENEGVASDNS 363


>SB_59233| Best HMM Match : Involucrin (HMM E-Value=2.5)
          Length = 138

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +2

Query: 326 NSFSWXKHHLXRL*T*KE-XWTVQSKAKTQQAKLRFKLLEGKEVSVQALAKDFQYFEVTT 502
           NSF   + HL RL + +E  +  QS+ + +Q +LR + L  ++  +Q   K  + F++T 
Sbjct: 16  NSFQEQERHLERLISQQEAVYRQQSEQQKEQQRLR-EELAAQQNKIQEQLKILENFQLTR 74

Query: 503 EEQTASSLSS 532
           E +  +S +S
Sbjct: 75  ENEGVASDNS 84


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 140 EAIAAEIGFFHPRLDKEVVIKSNAVFKVPEPN 235
           EA+ AEI    P++++EVV++S A     EP+
Sbjct: 523 EALKAEIDALKPKIEEEVVVQSAAPVAAGEPD 554


>SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1520

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 241 ISIWFRDLEDCVRLDDYLLIKSWVEESDFGCNSFLIPIIXDVDEVSN 101
           +S W R++ D    D+   ++ WV+++  G  S++   I DVDE+ +
Sbjct: 50  LSCWRRNIADVTVDDERTKLREWVDKTKKG--SWISRWISDVDEIES 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,130,848
Number of Sequences: 59808
Number of extensions: 366734
Number of successful extensions: 894
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)