Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1196
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 106 1e-23
AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a... 28 4.4
AC025726-2|AAO21421.1| 174|Caenorhabditis elegans Male abnormal... 28 4.4
AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal... 28 4.4
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 28 5.8
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 27 7.7
U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical pr... 27 7.7
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 106 bits (255), Expect = 1e-23
Identities = 49/82 (59%), Positives = 61/82 (74%)
Frame = +3
Query: 255 KGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVXNSPKQK 434
KGVT GF+YKMR+VYAHFPIN +GN +EIRNFLGEK +RRV + GV S QK
Sbjct: 80 KGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQK 139
Query: 435 DELIIEGNSLEDVSSSAALIQQ 500
DE+++EGN ++ VS +AA IQQ
Sbjct: 140 DEIVVEGNDVQFVSQAAARIQQ 161
Score = 97.5 bits (232), Expect = 6e-21
Identities = 41/80 (51%), Positives = 60/80 (75%)
Frame = +1
Query: 19 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 198
MK I +N V P+G+T VK+R+V V GPRG ++++F+HL +++ + L+V KWFG
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60
Query: 199 SKKELAAVRTVCSHVENMIK 258
+KELAA+RTVCSH++NMIK
Sbjct: 61 VRKELAAIRTVCSHIKNMIK 80
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +2
Query: 509 VKNKDIRKFLDGLYVSEKTTVVLDD 583
VK KDIRKFLDG+YVSEKTT+V D
Sbjct: 165 VKEKDIRKFLDGIYVSEKTTIVPTD 189
>AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a
protein.
Length = 658
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 269 FSYSFIMFSTCEQTVLTAASSFLDPN 192
FS FI +++CE + A ++F DPN
Sbjct: 7 FSVIFIAYNSCEAANIQADNTFADPN 32
>AC025726-2|AAO21421.1| 174|Caenorhabditis elegans Male abnormal
protein 20, isoform b protein.
Length = 174
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 269 FSYSFIMFSTCEQTVLTAASSFLDPN 192
FS FI +++CE + A ++F DPN
Sbjct: 7 FSVIFIAYNSCEAANIQADNTFADPN 32
>AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal
protein 20, isoform a protein.
Length = 658
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 269 FSYSFIMFSTCEQTVLTAASSFLDPN 192
FS FI +++CE + A ++F DPN
Sbjct: 7 FSVIFIAYNSCEAANIQADNTFADPN 32
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +3
Query: 261 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 398
++ F Y + +++ FPI C+ + I+ + +G Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 401 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 267
RC L ++F + +T LNN + + GD +++ + S VL F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 147 NSQVFEVPFENSAGPFNCHQTRFHMDR 67
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 147 NSQVFEVPFENSAGPFNCHQTRFHMDR 67
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical
protein T20B12.3 protein.
Length = 504
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 254 IMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 132
+++ + ++++LT SFL H T+ F R+S +CL
Sbjct: 280 LLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,642
Number of Sequences: 27780
Number of extensions: 283209
Number of successful extensions: 743
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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