Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1195
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   0.63 
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    27   1.1  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   4.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   4.4  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    24   5.9  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    24   7.8  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    24   7.8  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    24   7.8  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    24   7.8  

>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 172 PWQEWSDHYTCHRYRCEIRDG 234
           P+Q+W D+Y C  Y   +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/38 (26%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 169 QPWQEWSDHYTCHRYR-CEIRDGKYFIAAVDVENQKYR 279
           + +++W+   T + +R C+  D ++F+ A   +N+KY+
Sbjct: 97  EAYEDWNKDETDYLFRLCKDYDLRFFVIADRYDNEKYK 134


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 201 VPPLQMRDQRREILHSCCGCRKPKIPDN 284
           VPP    +QRR +  +C  CR+ KI  N
Sbjct: 27  VPP----EQRRRVFRACKHCRQKKIKCN 50


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 192 SLHVPPLQMRDQRREILHSCC 254
           S+HVPPL + +   EI  S C
Sbjct: 848 SIHVPPLNVPNAEGEIEESVC 868


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 279 PVFLV-FDIHSSYEVFPVSDLASVAVARVVIRPLLPRLVTFPGVFI 145
           PV L+ F+ H S+   P SDL+S      V   L+   ++FP + I
Sbjct: 739 PVLLIEFEQHQSFTSPPFSDLSSEIGKNDVQSKLVLLTLSFPNLRI 784


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +3

Query: 231 REILHSCCGCRKPKIP-DNALEC 296
           R  +HSC  CR+ K+  D+   C
Sbjct: 17  RRAIHSCLACRRKKLKCDHGRPC 39


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 100 LPALSAEDVSYQACVDKYSRKGYQPWQEW 186
           +P       S+++   + S+ GY  WQ W
Sbjct: 757 MPINEPLSASFESVNKENSQSGYMAWQNW 785


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 335 CGNSDIVIFDVXVAFQCVIRYFWFSTSTAAMK 240
           C N  ++++D+    +CV R F+  +S  +M+
Sbjct: 271 CRNKSVLVYDLRTKKECVQR-FYHGSSICSMQ 301


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIR 228
           +AC D++    Y  +++W+D Y   ++R E R
Sbjct: 162 EAC-DRHDPTFYPRFKKWADEYFLIKHRKETR 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,422,167
Number of Sequences: 5004
Number of extensions: 25742
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)