Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1195
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989... 31 0.19
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 31 0.33
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 31 0.33
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 30 0.57
06_01_0393 + 2831676-2831876,2831986-2832101,2832340-2832421,283... 28 1.8
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 28 2.3
02_05_0427 + 28893726-28893930,28895164-28895210 27 3.1
10_01_0164 + 1863890-1866253 27 4.0
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572... 27 4.0
09_06_0276 + 21980147-21980285,21980369-21980550,21980867-219811... 26 7.1
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 26 7.1
11_06_0164 + 20833525-20834685,20835053-20835124,20836302-208363... 26 9.3
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 26 9.3
02_01_0708 - 5298456-5298664,5299615-5299768,5300209-5300301,530... 26 9.3
>10_06_0035 -
9896289-9896390,9897394-9897503,9897587-9897715,
9898734-9898800,9898888-9898970,9899878-9899959,
9900049-9900125,9900206-9900289,9900368-9900437,
9900580-9900668,9900921-9901613,9902833-9903142
Length = 631
Score = 31.5 bits (68), Expect = 0.19
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV + +++ +PW W D+ T RC ++D KY
Sbjct: 288 QLCVFQVAKESKKPWIWW-DYVTDFHIRCPMKDKKY 322
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 30.7 bits (66), Expect = 0.33
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV K +++ +PW W D+ T RC +++ KY
Sbjct: 288 QVCVYKVAKEHGKPWL-WWDYVTDFAIRCPMKEKKY 322
>11_01_0101 -
738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 30.7 bits (66), Expect = 0.33
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV K +++ +PW W D+ T RC +++ KY
Sbjct: 288 QVCVYKVAKEHGKPWL-WWDYVTDFAIRCPMKEKKY 322
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 29.9 bits (64), Expect = 0.57
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV + + + +PW W D+ ++ RC +++ KY
Sbjct: 31 QLCVHRVANETGRPWAWW-DYVMDYKIRCSMKEKKY 65
>06_01_0393 +
2831676-2831876,2831986-2832101,2832340-2832421,
2832515-2832671,2832755-2832848,2833942-2834008,
2834464-2835009
Length = 420
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 94 LVLPALSAEDVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEI 225
+ +PA +A S AC + Q + E S TCH RC+I
Sbjct: 266 MTIPAEAASSSSAFACAVAALAEQQQMYGEASSTATCHTSRCDI 309
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 130 YQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
+Q CV K + + +PW W D+ RC +++ KY
Sbjct: 330 HQICVFKAANESGKPWL-WWDYVHDFSIRCPMKEKKY 365
>02_05_0427 + 28893726-28893930,28895164-28895210
Length = 83
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 162 RLPAVARVVGS-----LHVPPLQMRDQRREILHSCCGCRKPKIP 278
++P +A V+GS PPLQ +++ ++ S CG + KIP
Sbjct: 33 QIPTIASVIGSESSPPSSQPPLQRGGEKQHVMASSCGGER-KIP 75
>10_01_0164 + 1863890-1866253
Length = 787
Score = 27.1 bits (57), Expect = 4.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 50 YNTGSSWERWLCYVV 94
+N GS W+ W CY+V
Sbjct: 608 WNDGSVWKLWFCYMV 622
>07_03_1693 -
28756331-28756435,28756558-28756664,28757114-28757245,
28757412-28757478,28757553-28757635,28757824-28757905,
28763101-28763177,28763278-28763361,28763443-28763512,
28763625-28763713,28763801-28764487,28765700-28765997
Length = 626
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q C+ K + ++PW W D+ RC +++ KY
Sbjct: 282 QICLFKVGNETHKPW-VWWDYVHDFSIRCPMKEKKY 316
>09_06_0276 +
21980147-21980285,21980369-21980550,21980867-21981137,
21981263-21981351,21981474-21981538,21981656-21981758,
21982215-21982325,21982441-21982509,21982553-21982687
Length = 387
Score = 26.2 bits (55), Expect = 7.1
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +1
Query: 94 LVLPALSAEDVSY-QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAVDVENQ 270
+V P S +S QA + + +PW + R E + +A ++VE
Sbjct: 26 VVYPIKSCRGISVPQAAITSTGLRWDRPWLVMNSAGRAFTQRVEPK-----LALIEVEMP 80
Query: 271 KYRITHWNATNTSKMTMSEF 330
+ T W T S M +S+F
Sbjct: 81 QEAFTEWQPTPDSHMGISQF 100
>01_01_0009 +
57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 26.2 bits (55), Expect = 7.1
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 22 LVTMAGVLRIQH-GKQLGALVMLCCLVLPALSAEDVSYQACVDKYSRKG 165
++++AG L H GKQ+ A LVL L++ED+ A +D YS+ G
Sbjct: 343 MLSVAGSLPDVHIGKQIHAQ-----LVLLGLASEDLLGNALIDMYSKCG 386
>11_06_0164 +
20833525-20834685,20835053-20835124,20836302-20836328,
20836419-20836496,20837005-20837046
Length = 459
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 213 QMRDQRREILHSCCGCRKPKIPDNALECHXYIEDDN 320
Q+R R +LH P + +A E H Y +DD+
Sbjct: 137 QLRACRFRLLHLGFNSPLPSLTSSAAEAHQYNDDDD 172
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 223 IRDGKYFIAAVDVENQKYRITHWNATNTSKMTMSEFPQCWRD 348
+ DGK+F+ +D Q + +N +T E WR+
Sbjct: 347 VYDGKWFLKGLDSHRQVVSEVYMPTSNVWSVTADEMVTGWRN 388
>02_01_0708 -
5298456-5298664,5299615-5299768,5300209-5300301,
5300644-5300847,5302034-5302174,5302723-5302827,
5303485-5303874,5304573-5304713,5304756-5304845,
5305779-5306288
Length = 678
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 ERLPAVARVVGSLHVPPLQMRDQRREILHSCCGCRKPKIPDNAL 290
+ LPAVA S PPL +R +R H K P+ L
Sbjct: 15 QTLPAVAAASPSPSPPPLLLRPRREAFEHGLLPIPKLIFPEGTL 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,494,929
Number of Sequences: 37544
Number of extensions: 176057
Number of successful extensions: 479
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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