Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1195
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   3.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   4.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   9.6  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 175 WQEWSDHYTCHRYRCEIRDGKYFIAAVDVENQKYRITHW 291
           W E    Y  H++     D  Y  AA+D E  K  +T W
Sbjct: 175 WNEERKQYYLHQFATGQPDLNYRSAALDQE-MKNVLTFW 212


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = +1

Query: 139 CVDKYSRKGYQPWQEWSDHYTCHRYRCEIRD 231
           CV+ Y R     W + + H+   +  C + D
Sbjct: 110 CVNPYDRDSLSCWLQMTKHHNFIKV-CSVND 139


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 84  HNQRSQLLPVLYSQDASH 31
           +NQ++ L+PV YS   SH
Sbjct: 187 NNQQNILIPVNYSALLSH 204


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 275 YFWFSTSTAAMKYFPSLI 222
           Y WF+TS    + F  LI
Sbjct: 549 YIWFTTSGTISEKFRKLI 566


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 275 YFWFSTSTAAMKYFPSLI 222
           Y WF+TS    + F  LI
Sbjct: 602 YIWFTTSGTISEKFRKLI 619


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 252 CGCRKPKIPDNALECHXYIE 311
           CG R  K P +  EC    E
Sbjct: 142 CGLRLEKFPFDVQECPLIFE 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,823
Number of Sequences: 438
Number of extensions: 1856
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)