Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1194
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    42   9e-05
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    38   0.001
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    31   0.17 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.4  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   8.4  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   8.4  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = +2

Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRH 418
           S K  I SP++    GPY+QAI A+  +Y SG + +  + +++ G    QTRQ L NL+ 
Sbjct: 37  STKTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQE 94

Query: 419 VL 424
           VL
Sbjct: 95  VL 96



 Score = 32.7 bits (71), Expect = 0.042
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 421 LEAGGASLESVVKTTXLLASMDDFQTFNKAMXE 519
           L   G+SL  +VK    LA MDDF   NK   E
Sbjct: 96  LTEAGSSLNKIVKVNIFLADMDDFAAVNKVYTE 128


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 25/103 (24%), Positives = 44/103 (42%)
 Frame = +2

Query: 284 GPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLKLVALRWSRS*KL 463
           GPY+QA+ +   ++ SG   + +D   V G  + QTR  ++NL  VL++      +  K+
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 464 LXCWLAWTTSKLSTKLCXNNFPKAWPARMTYEVSRLTVGSTCG 592
                         ++     P   PAR T    ++ + S  G
Sbjct: 74  NIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPLSSKGG 116



 Score = 31.1 bits (67), Expect = 0.13
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 412 ATCLEAGGASLESVVKTTXLLASMDDFQTFNKAMXE 519
           A  L   G+SLE +VK    L  +DDF   N+   E
Sbjct: 57  AEVLRVAGSSLEKLVKVNIFLTDIDDFAAMNEVYKE 92


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGL 346
           +GPYSQ+I A+  ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 332  QKCIRSCPLKLLDCTDLLVDIFPEML-YCFCYFIVIRIF 219
            +K +RSC  K+L  T L  D+F  +  Y F     +R F
Sbjct: 1223 EKLVRSCLSKILGNTVLSADVFENLQNYGFDSLCAMRFF 1261


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 365 PSVHLDPIREFQKCIRSCPLKLLDCTDLLVDIF 267
           P   L P+  FQ  +R+CPL  +    LL +IF
Sbjct: 135 PGYSLRPV--FQVRLRACPLGSVQFNPLLAEIF 165


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 280 SRSVQSSNF--SGQDLIHFWNSRIGSRC 357
           S+ +Q   F  SGQD++ FW +R+   C
Sbjct: 504 SKDIQPLPFIESGQDILFFWIARMALLC 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,988
Number of Sequences: 5004
Number of extensions: 48306
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)