Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1194
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 41 9e-04
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 39 0.003
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 29 2.8
07_01_0548 - 4061829-4062956 29 3.7
06_03_0449 + 20907491-20910146,20910313-20910782 29 3.7
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426... 28 6.5
05_05_0218 - 23367998-23368441 27 8.6
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 27 8.6
>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGLDRDAQMVC-GGAEAQTRQALDN 409
+GPYSQA L + LY++G LGLD +C GG A+ AL N
Sbjct: 870 IGPYSQATLHGEILYMAGQLGLDPPTMKLCPGGPTAELEFALRN 913
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 38.7 bits (86), Expect = 0.003
Identities = 28/101 (27%), Positives = 46/101 (45%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLKLVALRWSRS*K 460
+GPYSQAI A+ +++SG+LGL+ + + N+ +LK +S K
Sbjct: 69 LGPYSQAIKANNMVFVSGVLGLN--------------PEVMKNMGEILKASGASYSSVVK 114
Query: 461 LLXCWLAWTTSKLSTKLCXNNFPKAWPARMTYEVSRLTVGS 583
K ++ FP PAR TY+V+ L + +
Sbjct: 115 TTIMLADLQDFKKVNEIYAKYFPAPAPARSTYQVAALPLNA 155
Score = 35.5 bits (78), Expect = 0.032
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 421 LEAGGASLESVVKTTXLLASMDDFQTFNK 507
L+A GAS SVVKTT +LA + DF+ N+
Sbjct: 102 LKASGASYSSVVKTTIMLADLQDFKKVNE 130
>05_01_0002 -
8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 268 NISTSRSVQSSNFSGQDLIHFWNSRIGSRCTDGLRWC*SADPSG 399
NIST RSV+SS+ S + H SR G+ C SA P+G
Sbjct: 816 NISTERSVESSHLSRPEQNH---SRANMEVKPGINAC-SATPAG 855
>07_01_0548 - 4061829-4062956
Length = 375
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 408 LSRA*RVCASAPPQTICASRSNPRIPEMYKVLSA 307
LS A ++C++ PP + +NPR+ Y L A
Sbjct: 21 LSAAAQLCSACPPAASQTAENNPRLQRAYVALQA 54
>06_03_0449 + 20907491-20910146,20910313-20910782
Length = 1041
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 482 WTTSKLSTKLCXNN-FPKAWPARMTYEVSRLTVGS 583
W+ KL+T + NN F A PA ++ +SR+ +G+
Sbjct: 439 WSFQKLTTVMIQNNGFTGALPAEISTNISRIEMGN 473
>01_01_0574 +
4263247-4263615,4263945-4263992,4264308-4264514,
4264670-4264826,4264958-4265041,4265785-4265909,
4268100-4268218,4268535-4268619,4269087-4269134
Length = 413
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 482 MLANKXVVFTTDSNEAPPASRHVADCPEPDGSALQHHRRPSVHLDPI 342
+L VV APPA V P+P G A +RRP V L +
Sbjct: 16 LLLQPEVVAPNHPPPAPPAPAAVPAPPQPQGEA--RYRRPLVRLQAV 60
>05_05_0218 - 23367998-23368441
Length = 147
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +2
Query: 416 HVLKLVALRWSRS*KLLXCWL--AW 484
HV++ V LRW + K + CWL AW
Sbjct: 92 HVVEAVFLRWLEAVKPVLCWLRSAW 116
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 345 WIEMHRWSAVVLKRRPVRLWTICDMS*SWWRFV 443
W E+ RW+ L+ + W+ CD WW V
Sbjct: 339 WTEIQRWTQTNLQ---MIKWSDCDSVEQWWNLV 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,119,740
Number of Sequences: 37544
Number of extensions: 310842
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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