Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1194
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              29   2.9  
SB_45405| Best HMM Match : Calpain_III (HMM E-Value=6.1e-07)           29   3.8  
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 27   8.7  

>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 446 SNEAPPASRHVADCPEPDGSALQHHRRP 363
           + + PPA  HV  C E   SA+ H  RP
Sbjct: 610 AKKQPPAPMHVVTCGESTPSAVTHTERP 637


>SB_45405| Best HMM Match : Calpain_III (HMM E-Value=6.1e-07)
          Length = 363

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 243 LLYCYSNFLLNSF--WAKLCLRTPVQNLLS 160
           LL  +S +  NSF  W+ LC  +P+ +LLS
Sbjct: 90  LLIIHSYYTFNSFVAWSSLCTLSPISDLLS 119


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 326 ISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLKL 430
           I+GIL L   A +  GGA+   +  L+N+ ++L +
Sbjct: 252 IAGILQLGNVAFLAAGGAQVADKNVLENVANLLNI 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,541,937
Number of Sequences: 59808
Number of extensions: 348763
Number of successful extensions: 830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)