Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1192
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55202| Best HMM Match : FIVAR (HMM E-Value=3.7)                     29   1.8  
SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7)                  29   1.8  
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)                   28   5.5  
SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)                  27   7.2  
SB_13481| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_55202| Best HMM Match : FIVAR (HMM E-Value=3.7)
          Length = 145

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 413 ISXHPNHDSEQXSRALEDRGATTRSEAQRAL 321
           I+ HP H+S+Q    L++ G  T  +A R +
Sbjct: 98  IAAHPGHESQQEKEILDENGLITTVDAARII 128


>SB_46288| Best HMM Match : Troponin (HMM E-Value=3.7)
          Length = 152

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 413 ISXHPNHDSEQXSRALEDRGATTRSEAQRAL 321
           I+ HP H+S+Q    L++ G  T  +A R +
Sbjct: 29  IAAHPGHESQQEKEILDENGLITTVDAARII 59


>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
          Length = 998

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 423 SRRHFPXSEPRQRTAFQSS*RPRCHDXERSSTRALRPXSSEERRSGT 283
           S  H P ++ R R+A +        D ERSS+   +P  +  RRS T
Sbjct: 317 SHSHIPSTQGRSRSAIKQE----SFDDERSSSDETKPSPATRRRSHT 359


>SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
          Length = 259

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 235 RLTDHLTTASNGSDSSSRGXEYST 164
           RLT++  +ASNGSD  +   E ST
Sbjct: 2   RLTNYTLSASNGSDDETSNKEVST 25


>SB_13481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 331 NARSTSXLVRGASLGNGDSVTSNAHRVLIWVXRLTDHLTTASNGSDSSSR 182
           N+ +T  + RG ++    S+TSN+ R +I     T      S G+ SSSR
Sbjct: 23  NSTATIPVGRGTAIPTCISITSNSLREMIGTCSTTFLCPRYSPGASSSSR 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,728,136
Number of Sequences: 59808
Number of extensions: 188154
Number of successful extensions: 344
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)